NIb

Euk-Vir

Tobacco_mosqueado_virus

NIb__YP_009252418__Tobacco_mosqueado_virus__1792583

Identity

91.2 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Tobacco_mosqueado_virus

TaxID: 1792583

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-29_64-80_248-311

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	59.5	3.70e-16	93.9%	17.3%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3d36B02	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.60	33.0	4.01e-01	73.5%	85.2%
5b1oA00	1.10.287.130	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain	0.57	33.0	3.91e-01	73.5%	84.6%
3qf7A02	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.56	32.0	3.82e-01	74.5%	87.3%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3479114	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.70	56.0	3.43e-01	86.7%	76.6%
4097490	3755.1.1.23 ↗	alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › CemA	0.60	38.0	3.57e-01	74.5%	53.9%
2033701	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.60	54.0	4.07e-01	100.0%	60.7%
2636124	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.58	53.0	3.98e-01	100.0%	60.7%
3560804	101.1.2.10 ↗	alpha arrays › HTH › HTH › winged helix domain › Linker_histone	0.55	30.0	3.16e-01	71.4%	56.5%
3226906	198.1.1.0 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like	0.54	37.0	4.00e-01	83.7%	82.4%
5049164	101.1.2.48 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR	0.51	34.0	3.10e-01	81.6%	50.0%

D2 medium residues 81-109_312-327_355-375

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ex8A00	3.40.1790.10	Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain	0.63	46.0	3.02e-01	100.0%	17.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3263171	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	41.0	3.71e-01	93.9%	87.4%

D3 medium residues 110-214

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	80.4	1.70e-22	100.0%	24.7%

D4 medium residues 215-247_328-354_376-403

PDB

Domain cluster: rep: NIb_segment__YP_008992252__Zucchini_tigre_mosaic_virus__1406816__D219-250_339-356_384-408

D5 medium residues 404-508

PDB

Domain cluster: rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	27.3	2.20e-06	53.3%	11.8%