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NIb
Euk-VirImpatiens_flower_break_virus
NIb__YP_009255234_NIb__Impatiens_flower_break_virus__2170135
Identity
- Accession:
- YP_009255234_NIb ↗
- Protein ID:
- NIb
- Kingdom:
- euk
Quality
90.1
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Impatiens_flower_break_virus
TaxID: 2170135
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 404-502
Domain cluster:
rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
D2
medium
residues 67-86_166-193_251-275_287-313
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009259752__Pseudogymnoascus_destructans_partitivirus-pa__1685502__D155-166_186-226_315-357
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 31.6 | 1.10e-07 | 52.0% | 13.8% |
| PF00680.26 | RdRP_1 | 25.7 | 6.80e-06 | 37.0% | 6.2% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2r7rA05 | 1.10.357.80 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.70 | 64.0 | 5.25e-01 | 99.0% | 99.4% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5366 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.86 | 81.0 | 5.22e-01 | 100.0% | 61.8% |
| 3589612 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.75 | 57.0 | 3.87e-01 | 80.0% | 41.5% |
| 3960648 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.70 | 53.0 | 3.71e-01 | 80.0% | 50.5% |
| 5038175 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.54 | 22.0 | 2.43e-01 | 74.0% | 42.5% |
D3
medium
residues 87-104_225-250_314-396
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 43.4 | 2.70e-11 | 66.9% | 20.2% |
D4
medium
residues 105-165_194-224_276-286
Domain cluster:
rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224