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NIb
Euk-VirPlatycodon_mild_mottle_virus
NIb__YP_010088117__Platycodon_mild_mottle_virus__2320870
Identity
- Accession:
- YP_010088117 ↗
- Protein ID:
- NIb
- Kingdom:
- euk
Quality
91.6
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Platycodon_mild_mottle_virus
TaxID: 2320870
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 48-77_405-473
Domain cluster:
rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
D2
medium
residues 78-103_223-271_305-404
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 67.5 | 1.40e-18 | 58.3% | 22.7% |
| PF00680.26 | RdRP_1 | 33.5 | 2.80e-08 | 33.7% | 11.3% |
D3
medium
residues 104-222_272-304
Domain cluster:
rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 75.1 | 6.80e-21 | 83.5% | 27.1% |