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NIb

Euk-Vir

Dendrobium_chlorotic_mosaic_virus

NIb__YP_010088127__Dendrobium_chlorotic_mosaic_virus__2562807

Identity

Accession:: YP_010088127 ↗
Protein ID:: NIb
Kingdom:: euk

Quality

91.6 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Dendrobium_chlorotic_mosaic_virus

TaxID: 2562807

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-80_405-477

PDB

Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488

D2 medium residues 81-113_256-322

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	56.0	4.20e-15	69.0%	14.9%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8be0A01	3.40.91.90	Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain	0.56	37.0	2.98e-01	91.0%	34.6%
1p65A00	6.10.140.90	Special › Helix non-globular › Helix Hairpins ›	0.56	24.0	3.18e-01	96.0%	71.9%
3uoxB01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.51	45.0	3.23e-01	98.0%	99.3%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1789314	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.83	78.0	5.03e-01	100.0%	59.6%
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.80	74.0	4.94e-01	100.0%	65.8%
3989356	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.61	47.0	3.77e-01	81.0%	55.7%
3960648	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.58	46.0	3.27e-01	84.0%	41.3%
3666430	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.54	41.0	2.68e-01	82.0%	34.6%
5083220	1075.1.2.0 ↗	alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain	0.54	41.0	2.72e-01	81.0%	93.5%
4029375	101.1.2.663 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF7602	0.53	30.0	3.15e-01	88.0%	60.0%
3479114	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.51	46.0	2.83e-01	100.0%	73.4%
4026519	3871.1.1.1 ↗	alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN	0.51	38.0	3.46e-01	79.0%	80.7%
4015750	7558.1.1.0 ↗	a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase	0.51	43.0	2.99e-01	95.0%	77.1%

D3 medium residues 114-219

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	64.8	9.20e-18	97.2%	23.3%

D4 medium residues 220-255_323-404

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	39.1	5.50e-10	69.5%	18.2%
PF00680.26	RdRP_1	24.7	1.30e-05	32.2%	8.4%