NIb

Euk-Vir

Blackberry_virus_Y

NIb__YP_851207__Blackberry_virus_Y__323118

Identity

85.6 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Brambyvirus› Blackberry_virus_Y

TaxID: 323118

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 78-130_186-241_278-331

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	56.6	2.70e-15	52.8%	17.3%

D2 medium residues 131-185

PDB

Domain cluster: rep: NIb__YP_004564597__Hardenbergia_mosaic_virus__409486__D110-163

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033774	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.61	42.0	4.08e-01	70.9%	76.7%

D3 medium residues 242-277_332-427

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	41.8	8.50e-11	74.2%	21.8%

D4 medium residues 428-551

PDB