←Back to structures
NIb_polymerase
Euk-VirNarcissus_degeneration_virus
NIb_polymerase__YP_001019196__Narcissus_degeneration_virus__394036
Identity
- Accession:
- YP_001019196 ↗
- Protein ID:
- NIb_polymerase
- Kingdom:
- euk
Quality
90.9
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Narcissus_degeneration_virus
TaxID: 394036
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 413-479
Domain cluster:
rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481
D2
medium
residues 15-36_66-87_115-223_259-315
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 76.7 | 2.20e-21 | 63.3% | 25.8% |
| PF00680.26 | RdRP_1 | 31.1 | 1.50e-07 | 28.1% | 12.7% |
D3
medium
residues 88-114_224-258_316-412
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 52.9 | 3.60e-14 | 62.3% | 23.6% |
| PF00680.26 | RdRP_1 | 27.6 | 1.70e-06 | 35.9% | 12.0% |