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NIb_polymerase
Euk-VirFritillary_virus_Y
NIb_polymerase__YP_001974444__Fritillary_virus_Y__332471
Identity
- Accession:
- YP_001974444 ↗
- Protein ID:
- NIb_polymerase
- Kingdom:
- euk
Quality
91.3
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Fritillary_virus_Y
TaxID: 332471
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 18-76
Domain cluster:
representative
D2
medium
residues 77-108_214-273_305-409
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 66.4 | 2.90e-18 | 55.3% | 23.1% |
| PF00680.26 | RdRP_1 | 43.4 | 2.80e-11 | 41.6% | 14.4% |
D3
medium
residues 109-213_274-304
Domain cluster:
rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 72.6 | 4.00e-20 | 77.2% | 24.4% |
D4
medium
residues 410-501
Domain cluster:
rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qvaA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.66 | 49.0 | 4.38e-01 | 78.3% | 86.8% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.65 | 45.0 | 4.35e-01 | 70.7% | 90.2% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 49.0 | 4.88e-01 | 81.5% | 92.6% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.63 | 56.0 | 4.72e-01 | 98.9% | 80.8% |
| 5d1rB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 49.0 | 3.73e-01 | 84.8% | 59.7% |
| 2fozA00 | 1.10.4080.10 | Mainly Alpha › Orthogonal Bundle › ADP-ribosylglycohydrolase fold › ADP-ribosylation/Crystallin J1 | 0.62 | 50.0 | 3.42e-01 | 87.0% | 68.7% |
| 1j1jA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.62 | 45.0 | 4.09e-01 | 78.3% | 88.6% |
| 3pjaJ01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.62 | 48.0 | 4.30e-01 | 83.7% | 77.1% |
| 3c5wA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.61 | 54.0 | 4.09e-01 | 100.0% | 57.5% |
| 2wauA02 | 1.20.58.830 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 43.0 | 3.90e-01 | 73.9% | 92.6% |
| 1t5oA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.60 | 46.0 | 4.04e-01 | 83.7% | 75.9% |
| 3aqbB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.60 | 47.0 | 3.27e-01 | 85.9% | 36.8% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 42.0 | 4.19e-01 | 76.1% | 96.9% |
| 3kkdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 47.0 | 3.74e-01 | 92.4% | 78.8% |
| 2ouwB00 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.57 | 45.0 | 3.93e-01 | 83.7% | 60.3% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 47.0 | 4.63e-01 | 92.4% | 96.9% |
| 1o0sA02 | 1.20.1370.30 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › | 0.56 | 40.0 | 3.86e-01 | 77.2% | 87.0% |
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 49.0 | 3.92e-01 | 100.0% | 98.4% |
| 2ha9B00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.54 | 48.0 | 3.15e-01 | 100.0% | 67.2% |
| 3nrgA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 43.0 | 3.34e-01 | 96.7% | 73.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3262164 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.69 | 52.0 | 3.68e-01 | 79.3% | 58.5% |
| 3782089 | 1065.1.1.0 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain | 0.68 | 50.0 | 4.14e-01 | 78.3% | 80.0% |
| 3441715 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 52.0 | 4.87e-01 | 81.5% | 99.1% |
| 3900684 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.64 | 48.0 | 4.14e-01 | 79.3% | 51.4% |
| 4984330 | 3651.1.1.0 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain | 0.64 | 49.0 | 4.97e-01 | 81.5% | 88.9% |
| 3923984 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.60 | 44.0 | 4.36e-01 | 76.1% | 93.7% |
| 4928534 | 191.1.1.63 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N | 0.58 | 47.0 | 3.90e-01 | 92.4% | 80.5% |
| 3928577 | 109.44.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Anaphase-promoting complex subunit 1 first helical domain › Anaphase-promoting complex subunit 1 first helical domain | 0.57 | 41.0 | 3.04e-01 | 76.1% | 83.2% |
| 3711742 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 4.60e-01 | 96.7% | 91.3% |
| 5061970 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.56 | 50.0 | 3.98e-01 | 100.0% | 56.8% |
| 3581267 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 40.0 | 4.13e-01 | 76.1% | 92.2% |
| 3585604 | 109.4.1.1255 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 | 0.56 | 49.0 | 3.81e-01 | 100.0% | 52.9% |
| 3872220 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 40.0 | 3.84e-01 | 76.1% | 87.3% |
| 3496653 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 40.0 | 3.83e-01 | 76.1% | 94.3% |
| 3935030 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.54 | 41.0 | 3.95e-01 | 79.3% | 90.5% |
| 3481965 | 603.1.1.17 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE | 0.54 | 40.0 | 3.41e-01 | 81.5% | 91.8% |
| 3681656 | 604.6.1.2 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH | 0.54 | 45.0 | 3.86e-01 | 92.4% | 94.0% |