NIb_polymerase

Euk-Vir

Narcissus_yellow_stripe_virus

NIb_polymerase__YP_002308563__Narcissus_yellow_stripe_virus__160843

Identity

90.7 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Narcissus_yellow_stripe_virus

TaxID: 160843

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 30-81_405-474

PDB

Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	33.5	2.90e-08	47.5%	12.0%

D2 medium residues 82-103_122-133_167-217_251-312

PDB

Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	54.7	1.00e-14	55.8%	13.8%
PF00680.26	RdRP_1	48.4	8.30e-13	43.5%	13.6%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pggA01	3.90.1730.10	Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain	0.79	74.0	5.47e-01	99.3%	69.7%
2r7rA05	1.10.357.80	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 ›	0.65	59.0	5.54e-01	98.6%	93.8%
1w53A00	1.10.1240.30	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain	0.56	33.0	4.10e-01	93.2%	100.0%
2a3vB01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.54	32.0	3.88e-01	81.0%	92.6%
2i2xB01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.50	29.0	3.33e-01	71.4%	80.0%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1789314	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.86	82.0	5.77e-01	100.0%	57.1%
5366	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.83	79.0	5.59e-01	100.0%	57.8%
217141	304.48.1.15 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3	0.82	78.0	5.69e-01	100.0%	62.7%
3960648	304.48.1.0 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like	0.67	54.0	4.22e-01	85.0%	59.7%
3313980	101.1.2.252 ↗	alpha arrays › HTH › HTH › winged helix domain › OHA	0.53	26.0	3.21e-01	76.9%	73.3%

D3 medium residues 104-121_134-166

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1g2rA00	3.30.1230.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like	0.64	45.0	3.62e-01	72.5%	40.4%
7r8bB01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	50.0	3.17e-01	90.2%	37.8%
2icwG02	1.10.10.530	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2	0.60	45.0	3.82e-01	82.4%	47.2%
7p2yC03	1.20.150.20	Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain	0.53	42.0	3.15e-01	88.2%	69.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3503213	101.1.2.74 ↗	alpha arrays › HTH › HTH › winged helix domain › Cnd2	0.64	46.0	3.78e-01	76.5%	41.5%
3971408	10.12.1.0 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix	0.63	45.0	3.13e-01	76.5%	88.2%
5052137	140.1.1.7 ↗	alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2	0.62	47.0	3.34e-01	80.4%	69.0%

D4 medium residues 218-250_313-404

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	53.6	2.20e-14	76.8%	21.8%