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NIb_polymerase
Euk-VirShallot_yellow_stripe_virus
NIb_polymerase__YP_331422__Shallot_yellow_stripe_virus__62059
Identity
- Accession:
- YP_331422 ↗
- Protein ID:
- NIb_polymerase
- Kingdom:
- euk
Quality
91.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Shallot_yellow_stripe_virus
TaxID: 62059
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-84_108-219_254-312
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 61.1 | 1.20e-16 | 45.1% | 25.1% |
| PF00680.26 | RdRP_1 | 31.9 | 8.40e-08 | 23.5% | 12.9% |
D2
medium
residues 85-107_220-253_313-399
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 54.9 | 9.30e-15 | 61.1% | 20.7% |
D3
medium
residues 405-505
Domain cluster:
rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 26.8 | 3.00e-06 | 54.5% | 11.6% |