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NIb_protein
Euk-VirLeek_yellow_stripe_virus
NIb_protein__NP_734101__Leek_yellow_stripe_virus__42004
Identity
- Accession:
- NP_734101 ↗
- Protein ID:
- NIb_protein
- Kingdom:
- euk
Quality
91.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Leek_yellow_stripe_virus
TaxID: 42004
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 16-28_195-218_254-314
Domain cluster:
rep: NIb__YP_010088127__Dendrobium_chlorotic_mosaic_virus__2562807__D81-113_256-322
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 46.0 | 4.50e-12 | 69.4% | 13.8% |
D2
medium
residues 29-62_408-472
Domain cluster:
rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
D3
medium
residues 63-79_110-194
Domain cluster:
rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 49.4 | 4.40e-13 | 98.0% | 20.7% |
D4
medium
residues 80-109_219-253_315-407
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 45.3 | 7.30e-12 | 58.9% | 21.3% |
| PF00680.26 | RdRP_1 | 32.1 | 7.30e-08 | 41.8% | 12.2% |