NIb_protein

Euk-Vir

Potato_virus_A

NIb_protein__NP_734367__Potato_virus_A__12215

Identity

88.8 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Potato_virus_A

TaxID: 12215

View cluster (450 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 405-507

PDB

Domain cluster: rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481

D2 medium residues 19-36_68-86_194-219_254-313

PDB

Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D1-17_73-106_202-219_246-320

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1khvA04	6.10.140.320	Special › Helix non-globular › Helix Hairpins ›	0.80	36.0	5.32e-01	74.8%	98.1%
1k32A03	3.30.750.44	Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA ›	0.56	29.0	3.61e-01	77.2%	83.3%
2a3vB01	1.10.150.130	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain	0.55	33.0	3.67e-01	90.2%	77.7%
2a2fX02	1.20.58.670	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D	0.54	29.0	2.94e-01	79.7%	48.1%
1dkxA02	1.20.1270.10	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.52	30.0	3.48e-01	85.4%	83.7%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3676014	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.58	51.0	3.32e-01	98.4%	55.1%
5081699	186.1.1.4 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4	0.52	33.0	3.74e-01	89.4%	85.6%
3933110	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.51	35.0	3.47e-01	79.7%	64.4%
5059724	186.1.1.4 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4	0.51	33.0	3.74e-01	90.2%	85.3%
2702235	101.1.2.407 ↗	alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2	0.51	33.0	3.50e-01	91.9%	73.6%

D3 medium residues 87-108_220-253_314-401

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	39.0	6.00e-10	60.4%	20.7%

D4 medium residues 109-193

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	40.3	2.50e-10	100.0%	20.2%