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NIb_protein
Euk-VirLily_mottle_virus
NIb_protein__NP_945144__Lily_mottle_virus__32624
Identity
- Accession:
- NP_945144 ↗
- Protein ID:
- NIb_protein
- Kingdom:
- euk
Quality
91.0
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Lily_mottle_virus
TaxID: 32624
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 404-500
Domain cluster:
rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
D2
medium
residues 23-33_64-75_123-193_277-313
Domain cluster:
rep: NIb__YP_003725727__Panax_virus_Y__796352__D1-80_166-195
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 48.3 | 9.00e-13 | 77.1% | 19.6% |
| PF00680.26 | RdRP_1 | 25.1 | 9.80e-06 | 26.7% | 6.9% |
D3
medium
residues 76-122_194-224_252-276
Domain cluster:
rep: NIb_protein__YP_006405412__Basella_rugose_mosaic_virus__373398__D84-163_251-272
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 32.0 | 3.61e-01 | 88.3% | 67.9% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.57 | 32.0 | 2.98e-01 | 85.4% | 42.6% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1481789 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.60 | 30.0 | 3.76e-01 | 89.3% | 82.8% |
| 3380943 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.57 | 39.0 | 2.98e-01 | 70.9% | 57.6% |
| 5058420 | 140.1.1.17 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › CysS_C | 0.54 | 34.0 | 2.89e-01 | 97.1% | 37.7% |
| 3504908 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.51 | 33.0 | 3.41e-01 | 91.3% | 67.0% |
D4
medium
residues 225-251_314-403
Domain cluster:
rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 54.9 | 8.90e-15 | 79.5% | 21.3% |