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NIb_protein

Euk-Vir

Sunflower_chlorotic_mottle_virus

NIb_protein__YP_003582553__Sunflower_chlorotic_mottle_virus__129732

Identity

Accession:: YP_003582553 ↗
Protein ID:: NIb_protein
Kingdom:: euk

Quality

91.4 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Sunflower_chlorotic_mottle_virus

TaxID: 129732

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 397-476

PDB

Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	28.0	1.40e-06	78.8%	12.7%

D2 medium residues 85-107_208-224_248-273_313-325_358-390

PDB

Domain cluster: rep: NIb_segment__YP_008992252__Zucchini_tigre_mosaic_virus__1406816__D89-103_251-270_313-338_357-383

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nufB00	1.10.1790.10	Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain	0.53	37.0	3.71e-01	89.3%	69.6%

D3 medium residues 108-207_274-312

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	70.5	1.70e-19	74.8%	23.6%

D4 medium residues 225-247_326-357

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ckwA03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.79	71.0	5.51e-01	100.0%	72.4%
3h5xA03	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.79	69.0	5.45e-01	100.0%	69.0%
1s48A04	3.30.70.270	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain	0.66	55.0	4.56e-01	100.0%	51.4%
1rkqA02	3.30.1240.10	Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 ›	0.53	36.0	2.94e-01	70.9%	98.1%
2zkzC00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	43.0	3.81e-01	96.4%	93.1%
1r1uB00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	41.0	3.65e-01	94.5%	87.1%
1u02A02	3.30.70.1020	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2	0.52	35.0	3.25e-01	72.7%	97.4%
1d5aA03	3.90.1600.10	Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain	0.51	38.0	2.78e-01	83.6%	62.8%
1r1tA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	41.0	3.53e-01	96.4%	82.7%
3gw2A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	38.0	3.43e-01	92.7%	88.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3590864	3012.1.1.0 ↗	a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain	0.54	36.0	3.02e-01	70.9%	100.0%
4962300	7523.1.1.0 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II	0.51	39.0	2.89e-01	89.1%	44.2%
3727976	320.1.1.0 ↗	a+b two layers › R3H domain-like › R3H domain › R3H domain	0.50	34.0	3.30e-01	72.7%	64.6%
4950303	101.1.2.751 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF6293_C	0.50	34.0	2.81e-01	70.9%	76.2%