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NIb_protein

Euk-Vir

Basella_rugose_mosaic_virus

NIb_protein__YP_006405412__Basella_rugose_mosaic_virus__373398

Identity

Accession:: YP_006405412 ↗
Protein ID:: NIb_protein
Kingdom:: euk

Quality

89.9 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Basella_rugose_mosaic_virus

TaxID: 373398

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 411-501

PDB

Domain cluster: rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481

D2 medium residues 1-31_62-83

PDB

Domain cluster: rep: NIb_protein__YP_006423955__Bidens_mottle_virus__433357__D1-32_66-84

D3 medium residues 84-163_251-272

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3tjmA02	1.10.1470.20	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2	0.54	27.0	2.86e-01	100.0%	54.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3938749	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.71	63.0	4.30e-01	100.0%	54.3%
3648382	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	45.0	3.77e-01	99.0%	96.8%

D4 medium residues 164-215_273-311

PDB

Domain cluster: rep: hypothetical_protein_1__YP_009333502__Beihai_picorna-like_virus_81__1922629__D1154-1179_1256-1299

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	47.8	1.20e-12	68.1%	13.1%
PF00680.26	RdRP_1	25.5	7.80e-06	46.2%	8.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pggA01	3.90.1730.10	Alpha Beta › Alpha-Beta Complex › Infectious bursal virus vp1 polymerase fold › Infectious bursal virus vp1 polymerase domain	0.79	74.0	4.84e-01	100.0%	34.4%
2wmmA01	1.20.5.420	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C	0.60	31.0	4.05e-01	91.2%	91.8%
3fxdB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	34.0	4.05e-01	91.2%	91.4%
2w00A02	3.90.640.50	Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 ›	0.55	32.0	3.45e-01	90.1%	68.5%
1r0vA01	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.54	28.0	3.00e-01	96.7%	55.8%
1ku9A02	1.10.287.450	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.52	32.0	3.73e-01	93.4%	89.1%
1z0pA00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	35.0	3.86e-01	93.4%	91.8%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1875037	304.48.1.8 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1	0.85	80.0	5.10e-01	100.0%	37.1%
None	—		0.84	79.0	5.09e-01	100.0%	38.0%
3589612	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.72	67.0	4.42e-01	100.0%	41.5%
3473558	304.48.1.1 ↗	a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1	0.65	51.0	3.81e-01	84.6%	59.1%
3991544	192.29.1.0 ↗	alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding)	0.55	43.0	4.20e-01	85.7%	85.0%
4979355	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	43.0	4.07e-01	85.7%	93.6%
3695052	109.4.1.363 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tcf25	0.54	47.0	3.01e-01	100.0%	24.6%
3381592	2486.1.1.6 ↗	a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ACCA	0.52	38.0	2.66e-01	78.0%	84.2%
3829789	101.1.2.245 ↗	alpha arrays › HTH › HTH › winged helix domain › PORR	0.52	38.0	3.43e-01	89.0%	56.0%
5024891	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.50	26.0	2.86e-01	100.0%	60.0%
1087087	101.1.2.26 ↗	alpha arrays › HTH › HTH › winged helix domain › HxlR	0.50	34.0	2.99e-01	71.4%	69.9%

D5 medium residues 216-250_312-410

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	52.9	3.60e-14	74.6%	21.1%