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NIb_protein
Euk-VirSugarcane_streak_mosaic_virus
NIb_protein__YP_006423941__Sugarcane_streak_mosaic_virus__53954
Identity
- Accession:
- YP_006423941 ↗
- Protein ID:
- NIb_protein
- Kingdom:
- euk
Quality
90.4
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Poacevirus›
Sugarcane_streak_mosaic_virus
TaxID: 53954
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-82_102-216_250-310
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 63.5 | 2.20e-17 | 50.0% | 25.8% |
| PF00680.26 | RdRP_1 | 36.3 | 3.80e-09 | 24.4% | 13.6% |
D2
medium
residues 83-101_217-249_311-405
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 35.5 | 6.70e-09 | 65.3% | 21.6% |
D3
medium
residues 406-492
Domain cluster:
rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481