NIb_protein

Euk-Vir

Chilli_ringspot_virus

NIb_protein__YP_006423993__Chilli_ringspot_virus__414528

Identity

91.0 mean pLDDT

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Chilli_ringspot_virus

TaxID: 414528

View cluster (450 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-28_63-82_170-190_289-306

PDB

Domain cluster: rep: NIb__YP_006908987__Rose_yellow_mosaic_virus__1048434__D56-72_158-201

D2 medium residues 29-62_409-473

PDB

Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488

D3 medium residues 83-109_251-288

PDB

Domain cluster: representative

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ashA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.67	46.0	3.53e-01	70.8%	99.3%
3ay5A01	1.20.1420.10	Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain	0.62	42.0	3.36e-01	72.3%	60.2%
1lt7B00	3.20.20.330	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Homocysteine-binding-like domain	0.55	48.0	3.10e-01	100.0%	33.3%
6cxtB01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.54	44.0	3.87e-01	98.5%	78.6%
4iscA00	3.40.50.150	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39	0.54	45.0	3.46e-01	95.4%	46.2%
3pfdA01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.53	43.0	3.74e-01	96.9%	78.6%
5af7A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.52	44.0	3.77e-01	96.9%	80.9%
1oj6A00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	35.0	2.82e-01	72.3%	47.6%
5xdcB01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.51	40.0	3.40e-01	86.2%	75.7%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3421751	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.62	43.0	3.55e-01	73.8%	67.2%
4880691	109.4.1.76 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Menin	0.55	46.0	3.35e-01	100.0%	68.7%
3507697	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.53	41.0	3.23e-01	83.1%	47.4%
3581267	604.1.1.0 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat	0.51	35.0	3.18e-01	72.3%	86.7%
3227144	3277.2.1.1 ↗	alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C	0.51	40.0	3.54e-01	90.8%	91.4%
4499385	563.1.1.1 ↗	alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP	0.51	42.0	3.14e-01	92.3%	90.0%

D4 medium residues 110-169_191-217

PDB

Domain cluster: rep: NIa__YP_003620390__Freesia_mosaic_virus__421012__D109-224

D5 medium residues 218-250_307-408

PDB

Domain cluster: rep: KR816341.1__AKQ06880.1__X__00021__D162-195_238-325

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00680.26 best	RdRP_1	61.0	1.30e-16	75.6%	23.8%