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NIb_protein
Euk-VirPokeweed_mosaic_virus
NIb_protein__YP_008719796__Pokeweed_mosaic_virus__1220025
Identity
- Accession:
- YP_008719796 ↗
- Protein ID:
- NIb_protein
- Kingdom:
- euk
Quality
91.2
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Patatavirales›
Potyviridae›
Potyvirus›
Pokeweed_mosaic_virus
TaxID: 1220025
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-50_69-84_160-196
Domain cluster:
rep: NIb__YP_003725727__Panax_virus_Y__796352__D1-80_166-195
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 30.1 | 3.10e-07 | 67.4% | 8.4% |
D2
medium
residues 85-107_220-255_316-413
Domain cluster:
rep: hypothetical_protein_2__YP_009337040__Changjiang_tombus-like_virus_21__1922815__D1-47_99-181
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 48.8 | 6.50e-13 | 62.4% | 24.4% |
| PF00680.26 | RdRP_1 | 24.3 | 1.70e-05 | 29.9% | 8.9% |
D3
medium
residues 108-159_197-219_256-315
Domain cluster:
rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 39.1 | 5.60e-10 | 45.2% | 13.1% |
D4
medium
residues 414-514
Domain cluster:
rep: NIb__YP_007032445__Cassava_brown_streak_virus__137758__D405-481