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NIb_segment

Euk-Vir

Zucchini_tigre_mosaic_virus

NIb_segment__YP_008992252__Zucchini_tigre_mosaic_virus__1406816

Identity

Accession:
YP_008992252 ↗
Protein ID:
NIb_segment
Kingdom:
euk

Quality

89.2 mean pLDDT

Taxonomy

Orthornavirae› Pisuviricota› Stelpaviricetes› Patatavirales› Potyviridae› Potyvirus› Zucchini_tigre_mosaic_virus

TaxID: 1406816

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-28_64-88_104-218_271-312
PDB
Domain cluster: rep: NIb__YP_009221991__Jasmine_virus_T__1775963__D1-51_64-80_112-210_276-312
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 61.5 9.10e-17 76.3% 26.7%
D2 medium residues 29-63_409-473
PDB
Domain cluster: rep: NIb_protein__YP_006280739__Tomato_necrotic_stunt_virus__1176153__D28-67_411-488
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00680.26 best RdRP_1 27.3 2.20e-06 62.0% 11.1%
D3 medium residues 89-103_251-270_313-338_357-383
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yxhA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.52 35.0 3.20e-01 85.2% 53.1%
2n3eA01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.51 41.0 3.83e-01 98.9% 67.8%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.51 43.0 3.99e-01 94.3% 89.4%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053508 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.54 48.0 3.08e-01 96.6% 22.1%
D4 medium residues 219-250_339-356_384-408
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s48A04 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.83 67.0 5.77e-01 85.3% 98.2%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.80 57.0 4.87e-01 74.7% 100.0%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 40.0 3.73e-01 74.7% 100.0%
5cqgA04 3.30.70.2630 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 49.0 4.38e-01 100.0% 95.3%