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NODE_12_length_310542_cov_175.846709.1__X__X__00032
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00032
Identity
- Kingdom:
- phage
Quality
60.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 148-249
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00226.37 best | DnaJ | 31.5 | 2.10e-07 | 49.0% | 66.7% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ys8A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.77 | 54.0 | 5.71e-01 | 93.1% | 81.1% |
| 2ctqA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.74 | 45.0 | 4.66e-01 | 82.4% | 66.0% |
| 4gc0A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.65 | 47.0 | 3.62e-01 | 75.5% | 92.5% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.63 | 43.0 | 4.85e-01 | 94.1% | 93.5% |
| 1vw4T01 | 6.10.330.20 | Special › Helix non-globular › Monooxygenase › | 0.63 | 51.0 | 4.96e-01 | 100.0% | 78.6% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.62 | 38.0 | 4.72e-01 | 80.4% | 100.0% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.60 | 49.0 | 5.19e-01 | 86.3% | 97.8% |
| 1j1jA02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.59 | 44.0 | 4.80e-01 | 95.1% | 94.1% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.59 | 41.0 | 4.52e-01 | 91.2% | 92.4% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.59 | 40.0 | 4.06e-01 | 91.2% | 71.7% |
| 3iqtA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.58 | 39.0 | 3.77e-01 | 98.0% | 60.5% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.57 | 41.0 | 4.54e-01 | 88.2% | 97.4% |
| 3ztaA00 | 1.10.490.130 | Mainly Alpha › Orthogonal Bundle › Globin-like › | 0.55 | 50.0 | 4.49e-01 | 99.0% | 95.0% |
| 3uumA00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 49.0 | 4.64e-01 | 100.0% | 89.3% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 40.0 | 4.21e-01 | 98.0% | 87.9% |
| 2oduA02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 45.0 | 4.53e-01 | 97.1% | 91.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.53 | 48.0 | 4.77e-01 | 99.0% | 99.1% |
| 3pe0A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 43.0 | 4.34e-01 | 89.2% | 85.8% |
| 3pe0A01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 44.0 | 4.43e-01 | 94.1% | 93.1% |
| 7p3rA01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.53 | 46.0 | 3.33e-01 | 100.0% | 78.5% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.53 | 48.0 | 4.61e-01 | 100.0% | 99.1% |
| 1s35A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 47.0 | 4.60e-01 | 100.0% | 94.5% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.51 | 40.0 | 3.91e-01 | 82.4% | 84.4% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.51 | 41.0 | 3.96e-01 | 98.0% | 77.2% |
| 3edvB01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 45.0 | 4.16e-01 | 100.0% | 77.9% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2594396 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.84 | 58.0 | 6.53e-01 | 95.1% | 90.0% |
| 3296891 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.80 | 53.0 | 4.37e-01 | 90.2% | 40.6% |
| 4027050 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.80 | 48.0 | 5.42e-01 | 84.3% | 77.5% |
| 3857799 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.80 | 47.0 | 4.70e-01 | 83.3% | 58.1% |
| 3727138 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.80 | 53.0 | 5.49e-01 | 91.2% | 72.6% |
| 3705589 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.79 | 55.0 | 5.64e-01 | 94.1% | 73.0% |
| 4304215 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.79 | 50.0 | 5.18e-01 | 92.2% | 68.4% |
| 3710919 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.77 | 57.0 | 5.17e-01 | 99.0% | 58.5% |
| 3712667 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.77 | 58.0 | 5.22e-01 | 100.0% | 59.3% |
| 3672796 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.76 | 47.0 | 4.92e-01 | 82.4% | 67.4% |
| 3211013 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.76 | 53.0 | 5.98e-01 | 97.1% | 91.3% |
| 3726260 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.76 | 48.0 | 4.36e-01 | 82.4% | 50.0% |
| 4025009 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.76 | 57.0 | 6.26e-01 | 99.0% | 94.1% |
| 3900766 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.75 | 49.0 | 4.58e-01 | 86.3% | 55.8% |
| 3703191 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.75 | 54.0 | 5.51e-01 | 81.4% | 76.0% |
| 3606082 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.74 | 49.0 | 5.22e-01 | 90.2% | 76.7% |
| 3458953 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.70 | 54.0 | 5.92e-01 | 87.3% | 96.5% |
| 3806318 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.70 | 55.0 | 5.62e-01 | 90.2% | 84.0% |
| 4385509 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.66 | 46.0 | 5.07e-01 | 79.4% | 85.9% |
| 3803481 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.65 | 43.0 | 4.84e-01 | 81.4% | 86.3% |
| 3455615 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.65 | 35.0 | 2.79e-01 | 87.3% | 26.0% |
| 3272287 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 48.0 | 4.85e-01 | 83.3% | 85.0% |
| 3667265 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.60 | 52.0 | 4.67e-01 | 97.1% | 91.0% |
| 4998688 | 192.2.1.89 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › DUF7121 | 0.60 | 42.0 | 3.15e-01 | 71.6% | 31.8% |
| 3397362 | 3615.1.1.29 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › DUF7775 | 0.59 | 51.0 | 4.67e-01 | 100.0% | 74.3% |
| 3595071 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.58 | 47.0 | 4.86e-01 | 87.3% | 89.5% |
| 3729299 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.58 | 49.0 | 4.33e-01 | 93.1% | 65.8% |
| 4606152 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.57 | 48.0 | 4.18e-01 | 98.0% | 75.9% |
| 3329547 | 604.6.1.22 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 | 0.57 | 47.0 | 4.64e-01 | 95.1% | 82.7% |
| 3855780 | 604.1.1.66 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_1st_PEPL | 0.57 | 49.0 | 4.77e-01 | 100.0% | 86.1% |
| 3268588 | 604.6.1.22 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › EMC4 | 0.55 | 46.0 | 4.50e-01 | 95.1% | 82.7% |
| 5078867 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 44.0 | 4.62e-01 | 92.2% | 96.7% |
| 4828003 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.54 | 49.0 | 4.61e-01 | 99.0% | 95.0% |
| 3624535 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 48.0 | 4.63e-01 | 97.1% | 96.5% |
| 3407217 | 192.29.1.158 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Tmemb_185A | 0.52 | 44.0 | 3.97e-01 | 93.1% | 75.7% |
| 3796046 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 46.0 | 4.44e-01 | 100.0% | 89.6% |
| 3273868 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.51 | 47.0 | 4.08e-01 | 100.0% | 68.0% |
D2
medium
residues 17-144