←Back to structures
NODE_12_length_310542_cov_175.846709.1__X__X__00115
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00115
Identity
- Kingdom:
- phage
Quality
92.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 113-216
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 38.0 | 4.09e-01 | 82.7% | 62.6% |
| 3eupB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.62 | 42.0 | 3.36e-01 | 73.1% | 36.0% |
| 6kjoA01 | 1.20.920.60 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.61 | 29.0 | 2.78e-01 | 76.0% | 37.1% |
| 2vmaA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.61 | 44.0 | 4.24e-01 | 76.0% | 95.9% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 47.0 | 3.75e-01 | 84.6% | 65.4% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.56 | 39.0 | 4.04e-01 | 87.5% | 75.2% |
| 6i2mB02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.54 | 32.0 | 3.11e-01 | 83.7% | 50.8% |
| 1t9kA01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.52 | 40.0 | 3.66e-01 | 81.7% | 67.9% |
| 3o39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.52 | 33.0 | 3.46e-01 | 79.8% | 69.8% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1300229 | 159.1.1.2 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG-like | 0.55 | 31.0 | 3.17e-01 | 77.9% | 56.0% |
| 3191445 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.55 | 42.0 | 3.41e-01 | 83.7% | 62.8% |
| 3906599 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 27.0 | 2.69e-01 | 76.0% | 43.5% |
| 4971427 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.52 | 39.0 | 3.31e-01 | 79.8% | 68.5% |
D2
medium
residues 3-100
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.68 | 30.0 | 3.58e-01 | 74.5% | 58.0% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.61 | 46.0 | 4.66e-01 | 80.6% | 97.0% |
| 1hxnA00 | 2.110.10.10 | Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain | 0.59 | 34.0 | 2.66e-01 | 74.5% | 26.2% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 38.0 | 3.81e-01 | 72.4% | 80.4% |
| 4bt2A01 | 3.30.1330.80 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 | 0.53 | 37.0 | 3.52e-01 | 77.6% | 61.4% |
| 4dnuA00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.51 | 37.0 | 2.54e-01 | 77.6% | 33.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3165843 | 109.4.1.191 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7 | 0.69 | 53.0 | 4.03e-01 | 80.6% | 50.9% |
| 4395529 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.60 | 41.0 | 4.26e-01 | 70.4% | 93.3% |
| 3896583 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.58 | 42.0 | 3.52e-01 | 77.6% | 71.4% |
| 4025997 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 39.0 | 3.13e-01 | 71.4% | 63.8% |
| 3987919 | 274.1.1.25 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › ComGF | 0.54 | 39.0 | 3.83e-01 | 91.8% | 67.3% |
| 2576776 | 5.1.4.62 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN | 0.54 | 38.0 | 2.67e-01 | 72.4% | 29.8% |
| 4332836 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 38.0 | 2.51e-01 | 74.5% | 22.6% |
| 4093822 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.52 | 37.0 | 3.87e-01 | 73.5% | 98.9% |
| 4166150 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.52 | 37.0 | 3.71e-01 | 74.5% | 83.8% |
| 3374672 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 37.0 | 2.48e-01 | 73.5% | 26.0% |
| 4225916 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.51 | 36.0 | 3.79e-01 | 74.5% | 88.9% |