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NODE_12_length_310542_cov_175.846709.1__X__X__00181
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00181
Identity
- Kingdom:
- phage
Quality
86.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 177-235
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.72 | 58.0 | 5.41e-01 | 93.2% | 97.4% |
| 3e46A02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.71 | 49.0 | 5.47e-01 | 83.1% | 100.0% |
| 1wgnA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.66 | 49.0 | 4.81e-01 | 88.1% | 74.6% |
| 3wleA01 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.66 | 57.0 | 3.93e-01 | 98.3% | 67.8% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.65 | 47.0 | 5.07e-01 | 78.0% | 100.0% |
| 1szqA01 | 1.10.4100.10 | Mainly Alpha › Orthogonal Bundle › 2-methylcitrate dehydratase PrpD › 2-methylcitrate dehydratase PrpD | 0.65 | 55.0 | 3.48e-01 | 98.3% | 67.7% |
| 2g3qA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 44.0 | 4.91e-01 | 78.0% | 100.0% |
| 1op1A00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.62 | 47.0 | 4.35e-01 | 86.4% | 90.2% |
| 3ci0K02 | 1.10.40.60 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like | 0.62 | 46.0 | 3.72e-01 | 78.0% | 73.5% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.62 | 50.0 | 4.18e-01 | 96.6% | 53.5% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.61 | 49.0 | 4.78e-01 | 98.3% | 98.6% |
| 1wivA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 42.0 | 3.96e-01 | 83.1% | 60.3% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.59 | 41.0 | 3.94e-01 | 74.6% | 76.4% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.59 | 43.0 | 4.37e-01 | 81.4% | 98.3% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.58 | 44.0 | 2.93e-01 | 81.4% | 61.9% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.58 | 41.0 | 4.15e-01 | 91.5% | 78.9% |
| 4azcA02 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.58 | 40.0 | 4.07e-01 | 76.3% | 100.0% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.57 | 43.0 | 3.80e-01 | 79.7% | 59.3% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.57 | 40.0 | 3.62e-01 | 76.3% | 72.7% |
| 3l6gA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 46.0 | 3.55e-01 | 96.6% | 98.7% |
| 1zkrB00 | 1.20.920.50 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.56 | 39.0 | 3.01e-01 | 74.6% | 66.9% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.56 | 40.0 | 2.87e-01 | 76.3% | 25.5% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 44.0 | 2.99e-01 | 89.8% | 55.3% |
| 1fadA00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.53 | 37.0 | 3.37e-01 | 81.4% | 85.3% |
| 3hx3A01 | 1.10.8.20 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p | 0.52 | 38.0 | 3.69e-01 | 83.1% | 92.5% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.49e-01 | 91.5% | 75.5% |
| 2whnA00 | 1.20.81.30 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › Type II secretion system (T2SS), domain F | 0.50 | 40.0 | 3.30e-01 | 96.6% | 47.3% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4224437 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.78 | 67.0 | 6.38e-01 | 94.9% | 85.7% |
| 3515170 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.78 | 67.0 | 6.48e-01 | 93.2% | 90.8% |
| 4938210 | 160.1.1.4 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C | 0.77 | 64.0 | 4.88e-01 | 93.2% | 71.4% |
| 3587505 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.77 | 66.0 | 6.36e-01 | 93.2% | 89.2% |
| 4082034 | 3317.1.1.2 ↗ | alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain › HTH_ParB | 0.76 | 64.0 | 6.11e-01 | 93.2% | 82.9% |
| 3517113 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.71 | 51.0 | 5.67e-01 | 81.4% | 100.0% |
| 4506648 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.70 | 52.0 | 5.52e-01 | 79.7% | 98.0% |
| 3820958 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.70 | 49.0 | 5.25e-01 | 81.4% | 89.8% |
| 3379162 | 148.1.3.227 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7750 | 0.70 | 48.0 | 4.56e-01 | 71.2% | 68.6% |
| 3904505 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.69 | 45.0 | 5.18e-01 | 74.6% | 100.0% |
| 3988185 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 44.0 | 4.90e-01 | 89.8% | 97.5% |
| 4358643 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.67 | 56.0 | 3.86e-01 | 96.6% | 87.3% |
| 4170287 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.67 | 54.0 | 3.76e-01 | 93.2% | 85.6% |
| 3707633 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.66 | 46.0 | 4.88e-01 | 84.7% | 88.0% |
| 2724457 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.66 | 47.0 | 5.02e-01 | 76.3% | 97.9% |
| 4665959 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 52.0 | 5.24e-01 | 89.8% | 98.3% |
| 4407568 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.65 | 50.0 | 4.97e-01 | 84.7% | 96.7% |
| 4248743 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 51.0 | 4.84e-01 | 89.8% | 82.9% |
| 4326979 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.63 | 46.0 | 4.71e-01 | 78.0% | 85.5% |
| 3611314 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.63 | 46.0 | 4.74e-01 | 89.8% | 85.5% |
| 3586817 | 103.1.1.1 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA | 0.63 | 48.0 | 4.55e-01 | 88.1% | 70.0% |
| 3586853 | 604.12.1.63 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ECF_trnsprt | 0.62 | 40.0 | 2.89e-01 | 74.6% | 22.2% |
| 3383233 | 103.1.1.27 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_7 | 0.61 | 45.0 | 3.49e-01 | 84.7% | 33.6% |
| 3984008 | 102.1.1.45 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › T2SSK_1st | 0.61 | 46.0 | 3.77e-01 | 79.7% | 76.4% |
| 1038614 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 49.0 | 4.96e-01 | 93.2% | 100.0% |
| 4303377 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.60 | 44.0 | 4.67e-01 | 79.7% | 100.0% |
| 3325559 | 386.1.1.3 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-TRAF | 0.60 | 46.0 | 3.66e-01 | 83.1% | 53.3% |
| 4169238 | 6130.1.1.1 ↗ | alpha complex topology › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Selenocysteine synthase N-terminal domain › Se-cys_synth_N | 0.59 | 45.0 | 4.26e-01 | 86.4% | 85.3% |
| 3970945 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.59 | 39.0 | 3.30e-01 | 71.2% | 59.1% |
| 2820062 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.58 | 40.0 | 2.49e-01 | 94.9% | 13.0% |
| 3827882 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 2.60e-01 | 78.0% | 27.8% |
| 4683276 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.55 | 43.0 | 3.68e-01 | 84.7% | 52.6% |
| 4946915 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 47.0 | 3.98e-01 | 100.0% | 75.2% |
| 4351042 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.54 | 46.0 | 4.68e-01 | 100.0% | 100.0% |
| 2527944 | 208.1.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep | 0.54 | 46.0 | 3.18e-01 | 98.3% | 66.1% |
D2
medium
residues 417-554
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00183__D1-89
D3
medium
residues 728-821
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00183__D1-89
D4
medium
residues 822-904
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00183__D1-89
D5
medium
residues 1001-1181
Domain cluster:
rep: LSDeep1_scaffold_42_prodigal-single.1__X__X__00235__D2-172