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NODE_12_length_310542_cov_175.846709.1__X__X__00215
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00215
Identity
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 146-220
Domain cluster:
rep: NODE_12_length_310542_cov_175.846709.1__X__X__00216__D74-137
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ui4A02 | 1.20.58.530 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 43.0 | 3.39e-01 | 70.7% | 50.3% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 37.0 | 3.55e-01 | 100.0% | 59.8% |
| 7dm9A01 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.51 | 43.0 | 3.44e-01 | 98.7% | 46.4% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.51 | 41.0 | 3.14e-01 | 88.0% | 44.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5058343 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.63 | 55.0 | 4.71e-01 | 100.0% | 70.4% |
| 3971974 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.61 | 53.0 | 4.82e-01 | 100.0% | 88.3% |
| 4214711 | 230.5.1.3 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › FliL | 0.60 | 53.0 | 4.85e-01 | 100.0% | 89.0% |
| 3758310 | 4.8.1.37 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo, Chromo_shadow | 0.54 | 43.0 | 3.68e-01 | 88.0% | 69.6% |
| None | — | 0.54 | 44.0 | 2.48e-01 | 88.0% | 24.8% | |
| 4665318 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.52 | 44.0 | 3.12e-01 | 100.0% | 37.2% |
| 3245438 | 379.1.1.1 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 | 0.51 | 28.0 | 3.21e-01 | 100.0% | 74.0% |
| 3580407 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.51 | 29.0 | 3.11e-01 | 100.0% | 63.3% |
| 3592093 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.51 | 44.0 | 3.08e-01 | 98.7% | 44.6% |
| 3505724 | 2492.1.1.8 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 | 0.51 | 38.0 | 3.18e-01 | 100.0% | 43.4% |
| 3840126 | 313.1.1.1 ↗ | a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C | 0.51 | 42.0 | 3.99e-01 | 96.0% | 85.1% |
D2
medium
residues 5-80
Domain cluster:
rep: KU935715.1__AND75446.1__ME3_285__00285__D2-62
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c1sA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.59 | 40.0 | 2.59e-01 | 71.1% | 85.3% |
| 4d2kB00 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 30.0 | 2.97e-01 | 84.2% | 47.5% |
| 3vx8A01 | 3.40.140.100 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain | 0.51 | 41.0 | 3.40e-01 | 88.2% | 93.6% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 37.0 | 2.79e-01 | 78.9% | 84.9% |
| 2iaiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.50 | 30.0 | 3.18e-01 | 80.3% | 67.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4991835 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 40.0 | 4.67e-01 | 82.9% | 88.0% |
| 3886850 | 387.1.1.10 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › zf-GRF | 0.65 | 31.0 | 2.89e-01 | 100.0% | 34.7% |
| 3708825 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 30.0 | 3.78e-01 | 81.6% | 73.3% |
| 5048394 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 37.0 | 4.57e-01 | 77.6% | 97.8% |
| 3608612 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 39.0 | 3.50e-01 | 71.1% | 66.1% |
| 4927432 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.56 | 38.0 | 3.81e-01 | 71.1% | 90.0% |
| 4010863 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.54 | 44.0 | 3.06e-01 | 90.8% | 84.4% |
| 3221152 | 196.1.1.1 ↗ | alpha bundles › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › Regulator of G-protein signaling, RGS › RGS | 0.54 | 34.0 | 2.76e-01 | 93.4% | 32.4% |
| 5004544 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.51 | 36.0 | 3.47e-01 | 73.7% | 94.1% |
D3
medium
residues 85-142
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zqcA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 42.0 | 4.08e-01 | 74.1% | 59.4% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.64 | 42.0 | 4.26e-01 | 72.4% | 67.2% |
| 4fp4A00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.63 | 45.0 | 3.00e-01 | 75.9% | 79.4% |
| 3c7jA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 53.0 | 4.59e-01 | 96.6% | 93.4% |
| 1j09A05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 46.0 | 3.98e-01 | 84.5% | 58.2% |
| 1pk1B00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.60 | 42.0 | 4.01e-01 | 75.9% | 64.3% |
| 6el2B01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 41.0 | 4.32e-01 | 74.1% | 95.9% |
| 2ii2A02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.59 | 44.0 | 4.41e-01 | 81.0% | 89.7% |
| 6b9sB02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 36.0 | 3.37e-01 | 93.1% | 49.3% |
| 3bs7A00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.59 | 41.0 | 3.86e-01 | 75.9% | 60.0% |
| 5jolA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.58 | 41.0 | 3.66e-01 | 74.1% | 84.1% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.57 | 46.0 | 4.22e-01 | 96.6% | 96.4% |
| 3d0sA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.80e-01 | 82.8% | 80.0% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 46.0 | 4.50e-01 | 100.0% | 84.6% |
| 2gwgA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.56 | 47.0 | 3.03e-01 | 100.0% | 83.5% |
| 2k1gA00 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.55 | 44.0 | 3.54e-01 | 94.8% | 95.3% |
| 3fbiD00 | 1.10.10.1340 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Mediator of RNA polymerase II, submodule Med31 (Soh1) | 0.54 | 44.0 | 3.83e-01 | 93.1% | 83.0% |
| 3safA02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 34.0 | 2.97e-01 | 70.7% | 39.0% |
| 2q2eA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 43.0 | 3.67e-01 | 100.0% | 63.2% |
| 3tqnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 44.0 | 4.14e-01 | 100.0% | 86.3% |
| 4evfA02 | 1.10.220.10 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin | 0.51 | 42.0 | 3.94e-01 | 98.3% | 98.6% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3553058 | 605.3.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain | 0.67 | 56.0 | 4.20e-01 | 91.4% | 61.4% |
| 5055703 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 45.0 | 4.51e-01 | 82.8% | 91.7% |
| 3515490 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 45.0 | 4.18e-01 | 82.8% | 81.3% |
| 5075915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 45.0 | 3.99e-01 | 82.8% | 68.2% |
| 3489661 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.59 | 40.0 | 2.82e-01 | 74.1% | 50.7% |
| 3611824 | 101.7.1.0 ↗ | alpha arrays › HTH › DEK-C › DEK-C | 0.59 | 42.0 | 3.99e-01 | 77.6% | 95.7% |
| 4997786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 42.0 | 3.82e-01 | 82.8% | 71.8% |
| 3279034 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.56 | 39.0 | 3.57e-01 | 74.1% | 58.7% |
| 3264136 | 3444.1.1.0 ↗ | alpha arrays › DP domain › DP domain › DP domain | 0.53 | 43.0 | 3.96e-01 | 100.0% | 69.4% |
| 4994527 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 44.0 | 4.09e-01 | 100.0% | 80.0% |
| 3403505 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.52 | 36.0 | 3.43e-01 | 75.9% | 78.7% |
| 3704485 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 36.0 | 3.15e-01 | 75.9% | 98.0% |
| 3758907 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.51 | 38.0 | 3.29e-01 | 81.0% | 56.8% |
| 5044804 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.51 | 44.0 | 3.06e-01 | 100.0% | 37.6% |
| 3741636 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.67e-01 | 100.0% | 71.0% |
| 5069139 | 2008.1.1.96 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RmuC | 0.51 | 43.0 | 3.14e-01 | 100.0% | 34.9% |