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NODE_12_length_310542_cov_175.846709.1__X__X__00229
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00229
Identity
- Kingdom:
- phage
Quality
68.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-96
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.67 | 41.0 | 4.56e-01 | 75.5% | 78.4% |
| 4alzA02 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.64 | 44.0 | 5.08e-01 | 89.4% | 98.5% |
| 1uwvA03 | 2.40.50.1070 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 45.0 | 3.99e-01 | 76.6% | 55.5% |
| 1ti6B02 | 3.30.70.20 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 4.13e-01 | 87.2% | 93.0% |
| 1g61A00 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.59 | 42.0 | 3.18e-01 | 73.4% | 50.7% |
| 4jm1A00 | 3.30.300.300 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.58 | 40.0 | 4.19e-01 | 72.3% | 100.0% |
| 3prbA03 | 3.30.70.2210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 4.52e-01 | 91.5% | 95.9% |
| 1wz8A01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.57 | 47.0 | 3.68e-01 | 91.5% | 90.8% |
| 3pg4A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 44.0 | 3.38e-01 | 87.2% | 81.3% |
| 1rxxC01 | 3.75.10.10 | Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A | 0.53 | 45.0 | 3.20e-01 | 98.9% | 70.0% |
| 3qreA00 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.52 | 41.0 | 3.23e-01 | 85.1% | 65.7% |
| 2cuaB00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 36.0 | 3.29e-01 | 73.4% | 65.9% |
| 2wtbA01 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.50 | 38.0 | 2.77e-01 | 83.0% | 57.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2455583 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.56 | 40.0 | 4.09e-01 | 74.5% | 97.7% |
| 5014917 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.55 | 37.0 | 4.21e-01 | 88.3% | 100.0% |
| 4217250 | 2003.1.5.53 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr | 0.55 | 48.0 | 3.28e-01 | 100.0% | 48.6% |
| 4192510 | 3008.1.1.0 ↗ | a+b three layers › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › A subdomain in the anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 29.0 | 3.12e-01 | 79.8% | 60.0% |
| None | — | 0.54 | 48.0 | 3.20e-01 | 100.0% | 45.3% | |
| None | — | 0.52 | 42.0 | 3.31e-01 | 88.3% | 69.3% | |
| 4964435 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.51 | 33.0 | 3.24e-01 | 87.2% | 59.0% |
| 3564180 | 2486.1.1.7 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Peptidase_S41 | 0.51 | 40.0 | 3.05e-01 | 87.2% | 60.0% |
| 4927259 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.50 | 41.0 | 3.80e-01 | 92.6% | 97.6% |
D2
medium
residues 97-146