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NODE_12_length_310542_cov_175.846709.1__X__X__00235
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00235
Identity
- Kingdom:
- phage
Quality
90.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-76
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.80 | 68.0 | 6.80e-01 | 100.0% | 89.5% |
| 4ihuA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.63 | 53.0 | 4.02e-01 | 98.7% | 52.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 40.0 | 3.32e-01 | 93.3% | 39.2% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.60 | 46.0 | 4.32e-01 | 84.0% | 97.8% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.59 | 43.0 | 4.63e-01 | 98.7% | 96.7% |
| 1fgmA05 | 1.20.245.10 | Mainly Alpha › Up-down Bundle › Lipoxygenase-1; domain 5 › Lipoxygenase-1; Domain 5 | 0.56 | 40.0 | 2.64e-01 | 76.0% | 59.1% |
| 2c60A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 41.0 | 4.05e-01 | 98.7% | 74.7% |
| 2hhzA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 46.0 | 3.86e-01 | 94.7% | 71.7% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.55 | 44.0 | 3.76e-01 | 94.7% | 97.1% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 43.0 | 4.23e-01 | 100.0% | 79.5% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 46.0 | 3.82e-01 | 100.0% | 77.7% |
| 3ujzA03 | 2.60.20.40 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.54 | 45.0 | 4.12e-01 | 94.7% | 88.0% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 44.0 | 3.86e-01 | 94.7% | 89.7% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.52 | 38.0 | 3.54e-01 | 78.7% | 84.4% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.52 | 45.0 | 4.39e-01 | 100.0% | 96.3% |
| 7ct1A01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.92e-01 | 86.7% | 97.6% |
| 1yx1A00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 38.0 | 2.73e-01 | 81.3% | 73.2% |
| 1wi0A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 40.0 | 3.60e-01 | 98.7% | 59.3% |
| 2wyqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 38.0 | 3.79e-01 | 98.7% | 79.2% |
| 3loiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 38.0 | 2.98e-01 | 81.3% | 40.0% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3590261 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.84 | 72.0 | 7.53e-01 | 97.3% | 98.5% |
| 3987692 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.81 | 66.0 | 6.81e-01 | 100.0% | 92.9% |
| 224066 | 822.3.1.1 ↗ | a+b two layers › GYF/BRK domain-like › conserved domain protein SP_1775 › conserved domain protein SP_1775 › DUF4649 | 0.79 | 67.0 | 6.72e-01 | 100.0% | 88.3% |
| 3704667 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.61 | 47.0 | 3.11e-01 | 84.0% | 46.9% |
| 3705856 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.60 | 46.0 | 3.12e-01 | 84.0% | 41.3% |
| 5046850 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.60 | 50.0 | 4.73e-01 | 93.3% | 97.8% |
| 3721580 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.59 | 45.0 | 3.09e-01 | 84.0% | 47.7% |
| 3734369 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.58 | 47.0 | 3.13e-01 | 89.3% | 44.9% |
| 3615237 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.57 | 46.0 | 3.00e-01 | 89.3% | 43.6% |
| 4030365 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.54 | 39.0 | 3.48e-01 | 80.0% | 53.3% |
| 4637265 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.54 | 39.0 | 3.30e-01 | 81.3% | 68.0% |
| 4997210 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.53 | 43.0 | 4.14e-01 | 90.7% | 97.8% |
| 3878917 | 632.2.1.33 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › Mob1_phocein | 0.52 | 37.0 | 3.16e-01 | 76.0% | 46.9% |
| 4557537 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.52 | 41.0 | 3.93e-01 | 86.7% | 93.3% |
| 4397568 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.52 | 39.0 | 3.66e-01 | 78.7% | 83.3% |
| 4995409 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.52 | 45.0 | 3.18e-01 | 100.0% | 58.0% |
| 3971569 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 39.0 | 3.80e-01 | 82.7% | 94.1% |
| 3766042 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.50 | 40.0 | 3.53e-01 | 86.7% | 74.5% |
D2
high
residues 81-147
Domain cluster:
rep: MK448703.1__QBX15707.1__Javan207_0021__00021__D4-59
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fkbC00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.60 | 45.0 | 3.44e-01 | 82.1% | 66.5% |
| 3eesA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.59 | 45.0 | 3.60e-01 | 80.6% | 63.4% |
| 4k6eA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.58 | 44.0 | 3.44e-01 | 80.6% | 55.6% |
| 1zpsA01 | 3.10.20.810 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphoribosyl-AMP cyclohydrolase | 0.57 | 45.0 | 4.01e-01 | 85.1% | 80.0% |
| 3gwyB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 42.0 | 3.42e-01 | 82.1% | 64.7% |
| 3q91B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.56 | 41.0 | 3.36e-01 | 80.6% | 59.5% |
| 3f13B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 40.0 | 3.15e-01 | 82.1% | 49.0% |
| 1fgxA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 41.0 | 2.74e-01 | 83.6% | 79.0% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.53 | 43.0 | 3.44e-01 | 92.5% | 59.7% |
| 4hpqB00 | 2.60.270.60 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 | 0.52 | 39.0 | 3.30e-01 | 82.1% | 69.6% |
| 6u7tA03 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.51 | 38.0 | 3.20e-01 | 80.6% | 64.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960072 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.65 | 48.0 | 3.88e-01 | 80.6% | 68.4% |
| 3839359 | 221.4.1.0 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix | 0.63 | 47.0 | 4.06e-01 | 80.6% | 60.0% |
| 4960074 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.61 | 45.0 | 3.66e-01 | 80.6% | 70.7% |
| 4958265 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.61 | 45.0 | 3.63e-01 | 80.6% | 71.1% |
| 4503474 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.60 | 45.0 | 3.50e-01 | 80.6% | 73.5% |
| 3388329 | 7599.1.1.1 ↗ | a/b three-layered sandwiches › UPF0246 protein YaaA › UPF0246 protein YaaA › UPF0246 protein YaaA › H2O2_YaaD | 0.59 | 46.0 | 3.12e-01 | 83.6% | 34.3% |
| 5048622 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.59 | 45.0 | 3.28e-01 | 82.1% | 56.8% |
| 3781145 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.59 | 44.0 | 3.34e-01 | 80.6% | 73.9% |
| 4616273 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.59 | 35.0 | 3.98e-01 | 94.0% | 86.7% |
| 3706798 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.58 | 45.0 | 2.84e-01 | 83.6% | 99.1% |
| 3587077 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.57 | 43.0 | 3.29e-01 | 80.6% | 68.7% |
| 3977403 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.56 | 42.0 | 3.44e-01 | 80.6% | 60.8% |
| 3591881 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.54 | 41.0 | 3.04e-01 | 82.1% | 53.9% |
| 3820378 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.54 | 40.0 | 2.93e-01 | 80.6% | 53.7% |
| 3741375 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.53 | 40.0 | 3.23e-01 | 80.6% | 48.9% |
| 4979080 | 221.10.1.0 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain | 0.53 | 40.0 | 3.98e-01 | 82.1% | 87.1% |
| 3572266 | 67.1.1.0 ↗ | beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain | 0.53 | 40.0 | 3.92e-01 | 82.1% | 76.0% |
| 3177204 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 38.0 | 3.93e-01 | 79.1% | 95.3% |
| 3716890 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.53 | 40.0 | 4.11e-01 | 82.1% | 84.6% |
| 4185820 | 221.4.1.9 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 | 0.52 | 37.0 | 3.16e-01 | 80.6% | 61.6% |
| 3505905 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 35.0 | 3.80e-01 | 100.0% | 94.0% |
| 3328504 | 221.1.1.80 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › KHA | 0.51 | 40.0 | 3.86e-01 | 85.1% | 98.7% |
| 3716899 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.50 | 42.0 | 2.68e-01 | 100.0% | 33.3% |
| 5045773 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.50 | 38.0 | 3.63e-01 | 82.1% | 72.5% |
| 4975815 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.50 | 37.0 | 3.47e-01 | 80.6% | 65.9% |