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NODE_12_length_310542_cov_175.846709.1__X__X__00252
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-69
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.88 | 63.0 | 6.60e-01 | 76.7% | 81.8% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.87 | 61.0 | 6.25e-01 | 78.3% | 75.9% |
| 2c5iT00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 53.0 | 4.49e-01 | 71.7% | 44.7% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.78 | 66.0 | 5.42e-01 | 91.7% | 81.6% |
| 4didB01 | 1.20.58.450 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cell division control protein 42 homolog | 0.76 | 61.0 | 4.88e-01 | 86.7% | 82.5% |
| 3k66A01 | 1.20.120.770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Amyloid precursor protein, E2 domain | 0.76 | 65.0 | 4.33e-01 | 91.7% | 27.3% |
| 3c24A02 | 1.10.3640.10 | Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal | 0.72 | 58.0 | 4.97e-01 | 91.7% | 64.0% |
| 1rykA00 | 1.10.1470.10 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ | 0.72 | 49.0 | 4.63e-01 | 70.0% | 95.7% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 59.0 | 4.78e-01 | 91.7% | 49.1% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 55.0 | 5.14e-01 | 90.0% | 69.0% |
| 1ufhA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.70 | 49.0 | 3.64e-01 | 73.3% | 28.4% |
| 4h63K00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 47.0 | 4.03e-01 | 73.3% | 43.9% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.68 | 51.0 | 3.16e-01 | 78.3% | 59.9% |
| 3aqlA02 | 1.10.3090.10 | Mainly Alpha › Orthogonal Bundle › cca-adding enzyme, domain 2 › cca-adding enzyme, domain 2 | 0.68 | 54.0 | 3.56e-01 | 86.7% | 41.9% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.67 | 54.0 | 4.42e-01 | 90.0% | 52.7% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.66 | 56.0 | 3.51e-01 | 93.3% | 79.5% |
| 4k08A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 48.0 | 3.70e-01 | 85.0% | 34.0% |
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 50.0 | 4.60e-01 | 88.3% | 65.4% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.64 | 43.0 | 4.13e-01 | 70.0% | 61.8% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 51.0 | 4.36e-01 | 90.0% | 96.0% |
| 2x43S00 | 6.10.140.1430 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 39.0 | 3.84e-01 | 71.7% | 56.7% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.60 | 40.0 | 3.55e-01 | 73.3% | 45.1% |
| 1m4rB00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 42.0 | 3.18e-01 | 73.3% | 60.3% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.59 | 49.0 | 3.42e-01 | 96.7% | 26.1% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 3.57e-01 | 71.7% | 56.4% |
| 1n69B00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.55 | 36.0 | 3.39e-01 | 75.0% | 52.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5068460 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.91 | 65.0 | 4.77e-01 | 75.0% | 31.0% |
| 3960463 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.91 | 68.0 | 6.83e-01 | 78.3% | 78.3% |
| 4973801 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.84 | 62.0 | 4.64e-01 | 80.0% | 34.1% |
| 4142281 | 105.1.1.55 ↗ | alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › Latarcin | 0.84 | 62.0 | 5.26e-01 | 81.7% | 50.0% |
| 3933048 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.83 | 65.0 | 5.41e-01 | 90.0% | 50.0% |
| 5009561 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.81 | 62.0 | 5.46e-01 | 81.7% | 85.9% |
| 3589629 | 307.1.1.3 ↗ | a+b two layers › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › Hedgehog/DD-peptidase › VanY | 0.79 | 60.0 | 4.05e-01 | 80.0% | 74.9% |
| 3799136 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.78 | 58.0 | 3.83e-01 | 78.3% | 20.4% |
| 4963338 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.78 | 52.0 | 5.29e-01 | 90.0% | 70.0% |
| 5051540 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.76 | 62.0 | 4.47e-01 | 88.3% | 32.7% |
| 5024277 | 1079.1.1.19 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 | 0.76 | 56.0 | 3.80e-01 | 81.7% | 23.0% |
| 4174713 | 192.1.1.2 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › GreA_GreB_N | 0.76 | 58.0 | 5.18e-01 | 81.7% | 60.0% |
| 4888660 | 5067.1.1.1 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › ACR_tran | 0.76 | 64.0 | 4.21e-01 | 96.7% | 22.4% |
| 3598977 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 62.0 | 5.52e-01 | 91.7% | 63.5% |
| 4941346 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.73 | 52.0 | 4.84e-01 | 81.7% | 60.0% |
| 4463205 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.72 | 62.0 | 3.59e-01 | 96.7% | 11.5% |
| 3215052 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.71 | 47.0 | 4.22e-01 | 70.0% | 48.2% |
| 4019401 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.71 | 59.0 | 4.41e-01 | 96.7% | 36.8% |
| 5066415 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.69 | 57.0 | 4.11e-01 | 90.0% | 33.9% |
| 5065662 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.69 | 52.0 | 4.94e-01 | 83.3% | 68.6% |
| 4941824 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.68 | 56.0 | 3.59e-01 | 93.3% | 57.7% |
| 3552352 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.65 | 44.0 | 3.93e-01 | 70.0% | 49.4% |
| 5043797 | 3542.1.1.1 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin | 0.61 | 52.0 | 3.44e-01 | 100.0% | 44.0% |
| 1124142 | 3788.1.1.1 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR | 0.59 | 43.0 | 3.69e-01 | 78.3% | 65.6% |
| 3923696 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.52 | 38.0 | 3.42e-01 | 91.7% | 54.4% |