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NODE_12_length_310542_cov_175.846709.1__X__X__00286
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00286
Identity
- Kingdom:
- phage
Quality
90.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-80
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5g5gB02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.72 | 37.0 | 3.45e-01 | 100.0% | 39.4% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.67 | 33.0 | 3.60e-01 | 100.0% | 55.6% |
| 3e18A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 33.0 | 2.39e-01 | 100.0% | 17.0% |
| 1t3qC03 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.61 | 35.0 | 3.10e-01 | 100.0% | 36.9% |
| 3hfiA00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.60 | 53.0 | 4.35e-01 | 100.0% | 74.5% |
| 3ci0J02 | 2.10.70.20 | Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains | 0.58 | 34.0 | 4.14e-01 | 100.0% | 88.0% |
| 3hzhB00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.58 | 51.0 | 4.06e-01 | 100.0% | 76.0% |
| 4hadB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.58 | 31.0 | 2.28e-01 | 100.0% | 17.9% |
| 4wiwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.58 | 41.0 | 4.26e-01 | 75.7% | 95.7% |
| 2ikkA00 | 3.40.1410.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like | 0.57 | 52.0 | 4.13e-01 | 100.0% | 69.9% |
| 4gc8B00 | 3.40.1550.10 | Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like | 0.57 | 50.0 | 3.85e-01 | 100.0% | 64.4% |
| 1gaxA03 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.57 | 43.0 | 3.45e-01 | 82.4% | 96.7% |
| 3cb0D00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.56 | 50.0 | 3.91e-01 | 100.0% | 64.6% |
| 1euhA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 44.0 | 3.13e-01 | 91.9% | 72.3% |
| 3bg3A04 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 30.0 | 3.46e-01 | 86.5% | 76.6% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.55 | 40.0 | 4.13e-01 | 75.7% | 81.4% |
| 1ileA02 | 3.90.740.10 | Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain | 0.55 | 41.0 | 3.11e-01 | 82.4% | 95.4% |
| 2bkwA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 40.0 | 3.44e-01 | 81.1% | 75.8% |
| 1ct9A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 42.0 | 3.27e-01 | 97.3% | 85.4% |
| 2ctjA00 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 41.0 | 3.76e-01 | 86.5% | 72.6% |
| 4okeA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 38.0 | 3.06e-01 | 83.8% | 98.8% |
| 1r5pB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 37.0 | 3.52e-01 | 81.1% | 95.7% |
| 3fhvA00 | 3.30.1690.10 | Alpha Beta › 2-Layer Sandwich › TcpA-like pilin › TcpA-like pilin | 0.50 | 32.0 | 2.60e-01 | 98.6% | 32.0% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5063170 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.70 | 34.0 | 3.15e-01 | 100.0% | 36.2% |
| 4012405 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.67 | 36.0 | 2.18e-01 | 100.0% | 9.2% |
| 4479921 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.65 | 36.0 | 3.07e-01 | 100.0% | 34.8% |
| 4983770 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.63 | 35.0 | 3.06e-01 | 100.0% | 36.4% |
| 3225681 | 103.1.1.18 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Regnase_1_C | 0.63 | 33.0 | 3.89e-01 | 85.1% | 75.6% |
| 5009465 | 244.3.1.3 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C | 0.60 | 34.0 | 2.99e-01 | 100.0% | 37.3% |
| 3680464 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.58 | 46.0 | 3.71e-01 | 98.6% | 43.5% |
| 4390141 | 236.1.1.1 ↗ | beta barrels › GroES-like › GroES-related › Alcohol dehydrogenase-like, N-terminal domain › ADH_N | 0.56 | 46.0 | 3.34e-01 | 91.9% | 58.6% |
| 4328219 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.55 | 50.0 | 4.08e-01 | 100.0% | 95.6% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.54 | 49.0 | 3.96e-01 | 100.0% | 95.7% |
| 3938992 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.54 | 47.0 | 3.10e-01 | 100.0% | 27.1% |
| 3797012 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 41.0 | 3.30e-01 | 85.1% | 93.5% |
| 3175224 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.53 | 40.0 | 2.98e-01 | 82.4% | 99.1% |
| 5082912 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.53 | 40.0 | 3.45e-01 | 83.8% | 89.2% |
| 3893845 | 130.1.1.12 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › BTHB | 0.52 | 39.0 | 3.80e-01 | 85.1% | 70.6% |
| 149888 | 813.1.1.2 ↗ | a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 | 0.50 | 45.0 | 3.27e-01 | 100.0% | 81.8% |