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NODE_12_length_310542_cov_175.846709.1__X__X__00304
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00304
Identity
- Kingdom:
- phage
Quality
77.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-105
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uj9A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 46.0 | 3.37e-01 | 76.7% | 93.4% |
| 8alzB08 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.59 | 43.0 | 4.04e-01 | 77.7% | 96.2% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.58 | 39.0 | 4.01e-01 | 85.4% | 70.7% |
| 4lctB00 | 1.25.40.570 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.58 | 42.0 | 2.93e-01 | 76.7% | 49.4% |
| 2v0pA00 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.57 | 42.0 | 3.31e-01 | 76.7% | 72.0% |
| 3draA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.57 | 40.0 | 2.90e-01 | 85.4% | 25.2% |
| 2va8A03 | 1.10.3380.30 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › | 0.57 | 42.0 | 3.32e-01 | 79.6% | 64.0% |
| 4f91B04 | 1.10.3380.10 | Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain | 0.56 | 42.0 | 3.77e-01 | 78.6% | 90.1% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.56 | 38.0 | 4.22e-01 | 78.6% | 91.1% |
| 1kpgD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 43.0 | 3.12e-01 | 82.5% | 92.9% |
| 5jqkA03 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 40.0 | 2.89e-01 | 75.7% | 96.6% |
| 3ag7A00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 42.0 | 4.22e-01 | 97.1% | 80.0% |
| 2bvlA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 43.0 | 4.64e-01 | 84.5% | 100.0% |
| 4dmvA01 | 1.20.58.1190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 42.0 | 4.54e-01 | 86.4% | 100.0% |
| 4c91A03 | 1.20.58.2150 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 38.0 | 3.16e-01 | 78.6% | 52.5% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3310955 | 630.1.1.1 ↗ | a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › Rubis-subs-bind | 0.63 | 48.0 | 4.47e-01 | 81.6% | 75.4% |
| 3477207 | 4320.1.1.1 ↗ | alpha superhelices › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › Taf5 N-terminal domain-like › TFIID_NTD2 | 0.60 | 42.0 | 3.39e-01 | 80.6% | 38.5% |
| 4565036 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.59 | 42.0 | 3.13e-01 | 75.7% | 53.1% |
| 3283518 | 2003.1.5.21 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CMAS | 0.57 | 46.0 | 3.30e-01 | 84.5% | 92.4% |
| 3483432 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 43.0 | 3.07e-01 | 84.5% | 36.8% |
| 4979217 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.54 | 40.0 | 3.98e-01 | 78.6% | 94.5% |
| 3209663 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.54 | 37.0 | 3.97e-01 | 78.6% | 85.9% |
| None | — | 0.53 | 44.0 | 2.90e-01 | 94.2% | 78.1% | |
| 2074038 | 633.16.1.2 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like › TcdB_N | 0.53 | 42.0 | 4.53e-01 | 94.2% | 100.0% |
| 4214723 | 109.4.1.1248 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2753 | 0.51 | 41.0 | 3.85e-01 | 86.4% | 77.7% |
| 5006929 | 219.1.1.76 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 | 0.51 | 39.0 | 3.03e-01 | 83.5% | 46.3% |