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NODE_12_length_310542_cov_175.846709.1__X__X__00317
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00317
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-76
Domain cluster:
rep: MK448703.1__QBX15707.1__Javan207_0021__00021__D4-59
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jzeA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.65 | 45.0 | 3.39e-01 | 100.0% | 29.6% |
| 1bmlC03 | 3.10.20.150 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.65 | 51.0 | 4.75e-01 | 86.2% | 95.2% |
| 3q91B00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.65 | 48.0 | 3.85e-01 | 80.0% | 59.5% |
| 2dyoA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 47.0 | 4.42e-01 | 86.2% | 97.6% |
| 3u7zA00 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.60 | 47.0 | 4.14e-01 | 86.2% | 95.9% |
| 3i57A01 | 3.10.20.470 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 45.0 | 4.35e-01 | 83.1% | 96.0% |
| 3ng0A01 | 3.10.20.70 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain | 0.59 | 49.0 | 4.35e-01 | 100.0% | 86.4% |
| 4ifeA02 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.58 | 48.0 | 3.46e-01 | 100.0% | 85.9% |
| 2kt7A01 | 3.10.20.320 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Putative peptidoglycan bound protein (lpxtg motif) | 0.58 | 45.0 | 4.09e-01 | 83.1% | 70.6% |
| 2pmvA02 | 2.170.130.30 | Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › | 0.58 | 44.0 | 3.83e-01 | 86.2% | 97.2% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.58 | 44.0 | 4.73e-01 | 86.2% | 98.2% |
| 1v5oA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 43.0 | 3.75e-01 | 84.6% | 75.5% |
| 2i5eA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 38.0 | 2.90e-01 | 70.8% | 41.9% |
| 4g5aA00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 46.0 | 4.16e-01 | 100.0% | 73.7% |
| 3fkaB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 47.0 | 3.88e-01 | 96.9% | 85.8% |
| 2rkvA02 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.55 | 46.0 | 3.30e-01 | 100.0% | 55.3% |
| 1pz4A00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.55 | 43.0 | 3.78e-01 | 93.8% | 83.2% |
| 3nqhA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 45.0 | 3.58e-01 | 92.3% | 60.3% |
| 3bkrA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.55 | 42.0 | 3.66e-01 | 92.3% | 88.2% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.54 | 40.0 | 3.10e-01 | 100.0% | 34.7% |
| 1et9A01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 3.60e-01 | 90.8% | 69.1% |
| 3kwlA01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.53 | 40.0 | 3.58e-01 | 84.6% | 87.6% |
| 1yd0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.53 | 42.0 | 3.89e-01 | 93.8% | 80.9% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 41.0 | 4.00e-01 | 89.2% | 76.7% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 44.0 | 3.53e-01 | 96.9% | 85.5% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.52 | 39.0 | 3.37e-01 | 83.1% | 72.8% |
| 6ovpA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.52 | 41.0 | 3.53e-01 | 92.3% | 89.8% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 41.0 | 3.42e-01 | 96.9% | 84.4% |
| 1iktA00 | 3.30.1050.10 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain | 0.52 | 42.0 | 3.57e-01 | 92.3% | 87.0% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 42.0 | 3.71e-01 | 93.8% | 92.9% |
| 2z8lA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 43.0 | 3.66e-01 | 100.0% | 95.7% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4958265 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.68 | 53.0 | 4.16e-01 | 83.1% | 71.9% |
| 3694098 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.67 | 53.0 | 4.35e-01 | 86.2% | 93.3% |
| 3999004 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.67 | 51.0 | 3.29e-01 | 81.5% | 25.9% |
| 2557339 | 239.4.1.1 ↗ | beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain › Gln-synt_N | 0.65 | 55.0 | 4.70e-01 | 96.9% | 85.2% |
| 5026569 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 50.0 | 4.17e-01 | 86.2% | 96.5% |
| 3688674 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 48.0 | 4.05e-01 | 86.2% | 97.4% |
| 3797422 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 52.0 | 3.78e-01 | 95.4% | 73.7% |
| 5014177 | 4237.1.1.1 ↗ | beta barrels › FomD-like › FomD-like › FomD-like › DUF402 | 0.61 | 45.0 | 3.46e-01 | 83.1% | 60.1% |
| 3937222 | 243.1.1.50 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind | 0.60 | 51.0 | 3.68e-01 | 95.4% | 72.6% |
| 5028603 | 221.1.1.50 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 | 0.60 | 45.0 | 4.01e-01 | 81.5% | 95.8% |
| 145199 | 221.1.1.50 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 | 0.60 | 47.0 | 4.14e-01 | 86.2% | 95.9% |
| 3177204 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.59 | 44.0 | 4.50e-01 | 83.1% | 98.4% |
| 4459724 | 221.9.1.1 ↗ | a+b two layers › beta-Grasp › N-terminal domain of bypass of forespore C, BofC › N-terminal domain of bypass of forespore C, BofC › BOFC_N | 0.58 | 45.0 | 4.52e-01 | 86.2% | 83.1% |
| 3924460 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 43.0 | 3.82e-01 | 83.1% | 72.0% |
| 4016613 | 221.3.1.0 ↗ | a+b two layers › beta-Grasp › Immunoglobulin-binding domains › Immunoglobulin-binding domains | 0.57 | 45.0 | 4.13e-01 | 84.6% | 78.3% |
| 5015864 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.56 | 45.0 | 4.10e-01 | 86.2% | 67.1% |
| 3700482 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 43.0 | 3.75e-01 | 86.2% | 96.2% |
| 3729755 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.56 | 41.0 | 3.79e-01 | 84.6% | 93.7% |
| 4964644 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.56 | 41.0 | 4.40e-01 | 83.1% | 94.5% |
| 4968500 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.55 | 41.0 | 4.20e-01 | 84.6% | 84.1% |
| 6510 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.55 | 43.0 | 3.78e-01 | 93.8% | 83.2% |
| 3786778 | 221.1.1.68 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblA | 0.55 | 43.0 | 3.48e-01 | 87.7% | 73.8% |
| 169695 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.55 | 42.0 | 3.66e-01 | 92.3% | 88.2% |
| 5003526 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.54 | 41.0 | 3.86e-01 | 84.6% | 68.2% |
| 3060384 | 268.1.1.1 ↗ | a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2 | 0.54 | 44.0 | 3.64e-01 | 92.3% | 78.9% |
| 3702087 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 42.0 | 3.93e-01 | 87.7% | 78.8% |
| 3590111 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.54 | 44.0 | 2.74e-01 | 87.7% | 30.3% |
| 4951383 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.54 | 42.0 | 3.96e-01 | 86.2% | 68.8% |
| 5075349 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.54 | 40.0 | 3.99e-01 | 83.1% | 81.4% |
| 4438511 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.53 | 42.0 | 4.37e-01 | 92.3% | 95.0% |
| 4652157 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 47.0 | 4.00e-01 | 100.0% | 70.0% |
| 5020150 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 42.0 | 3.90e-01 | 86.2% | 67.1% |
| 4952589 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 41.0 | 4.32e-01 | 84.6% | 95.0% |
| 4175683 | 221.1.1.191 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › WDCP | 0.53 | 39.0 | 3.69e-01 | 83.1% | 90.6% |
| 3579232 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 40.0 | 3.73e-01 | 86.2% | 84.4% |
| 4984657 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 41.0 | 3.78e-01 | 84.6% | 68.2% |
| 4954187 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 40.0 | 4.17e-01 | 84.6% | 96.7% |
| 4989862 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.53 | 40.0 | 3.98e-01 | 84.6% | 82.9% |
| 5075317 | 221.10.1.0 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain | 0.52 | 40.0 | 4.03e-01 | 84.6% | 90.8% |
| 4998473 | 221.10.1.1 ↗ | a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain › FdhD-NarQ | 0.52 | 40.0 | 3.71e-01 | 84.6% | 68.2% |
| 3611091 | 301.6.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › Tubulin C-terminal domain-like › Tubulin C-terminal domain-like | 0.52 | 35.0 | 2.71e-01 | 70.8% | 66.1% |
| 4130499 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.52 | 40.0 | 3.10e-01 | 84.6% | 100.0% |
| 3349329 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 43.0 | 3.64e-01 | 100.0% | 96.7% |
| 5080533 | 2003.1.5.62 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I | 0.50 | 35.0 | 2.27e-01 | 73.8% | 80.0% |
| 141426 | 221.1.1.17 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Stap_Strp_tox_C | 0.50 | 38.0 | 3.36e-01 | 89.2% | 70.2% |