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NODE_12_length_310542_cov_175.846709.1__X__X__00318
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00318
Identity
- Kingdom:
- phage
Quality
95.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-75
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.60 | 43.0 | 4.66e-01 | 77.0% | 95.1% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.59 | 32.0 | 3.97e-01 | 85.1% | 97.4% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.53 | 34.0 | 3.86e-01 | 86.5% | 98.0% |
| 1uasA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 38.0 | 3.68e-01 | 83.8% | 75.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4953501 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 37.0 | 4.79e-01 | 85.1% | 100.0% |
| 4961283 | 101.1.2.935 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_B0008_C | 0.59 | 42.0 | 3.77e-01 | 75.7% | 98.2% |
| 3357823 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.58 | 31.0 | 3.41e-01 | 86.5% | 61.7% |
| 3305957 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.58 | 34.0 | 3.77e-01 | 95.9% | 74.5% |
| 3824943 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.54 | 39.0 | 3.87e-01 | 90.5% | 72.5% |
| 3357277 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.54 | 39.0 | 3.84e-01 | 90.5% | 72.5% |
| 3613855 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 32.0 | 3.28e-01 | 95.9% | 64.9% |
| 4885815 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.51 | 30.0 | 3.45e-01 | 97.3% | 80.0% |
| 3954522 | 3108.1.1.0 ↗ | a+b two layers › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 › Uncharacterized protein Atu1219 | 0.51 | 34.0 | 3.51e-01 | 97.3% | 74.3% |
| 4980673 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.82e-01 | 97.3% | 69.1% |
D2
high
residues 81-160
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1s48A04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.65 | 36.0 | 3.28e-01 | 100.0% | 38.7% |
| 2cxiA03 | 3.30.56.10 | Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › | 0.65 | 37.0 | 3.95e-01 | 98.8% | 62.9% |
| 4q5eA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 41.0 | 4.24e-01 | 100.0% | 69.3% |
| 3jcmH04 | 3.30.70.870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 | 0.63 | 37.0 | 3.83e-01 | 98.8% | 59.7% |
| 2gjhA00 | 3.30.1070.20 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › | 0.62 | 37.0 | 4.29e-01 | 98.8% | 84.2% |
| 2vqcA00 | 1.10.10.1470 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › F-112 protein-like | 0.62 | 40.0 | 4.18e-01 | 97.5% | 74.3% |
| 3daoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 34.0 | 3.14e-01 | 100.0% | 39.4% |
| 3qx3B03 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.60 | 38.0 | 3.57e-01 | 100.0% | 51.0% |
| 2l9dA00 | 3.30.70.2340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 | 0.60 | 42.0 | 3.78e-01 | 100.0% | 53.7% |
| 7txnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 36.0 | 3.54e-01 | 100.0% | 53.3% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 35.0 | 3.62e-01 | 97.5% | 62.3% |
| 6vudA02 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.58 | 33.0 | 3.39e-01 | 100.0% | 57.3% |
| 3cuqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 4.13e-01 | 100.0% | 74.1% |
| 1s2oA02 | 3.90.1070.10 | Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › | 0.58 | 34.0 | 3.62e-01 | 100.0% | 64.8% |
| 6h4lA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 36.0 | 3.38e-01 | 100.0% | 52.1% |
| 5mmjh01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.57 | 34.0 | 3.52e-01 | 100.0% | 62.7% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.56 | 37.0 | 3.43e-01 | 100.0% | 53.4% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 37.0 | 3.57e-01 | 92.5% | 59.8% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 33.0 | 3.61e-01 | 91.3% | 74.6% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 35.0 | 3.75e-01 | 96.2% | 79.7% |
| 4hw0C00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 33.0 | 3.16e-01 | 97.5% | 50.5% |
| 1i94H01 | 3.30.1370.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 31.0 | 3.17e-01 | 100.0% | 56.4% |
| 4qmfD02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.53 | 35.0 | 3.41e-01 | 98.8% | 58.7% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 34.0 | 3.19e-01 | 93.8% | 50.5% |
| 2lh9A00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.53 | 37.0 | 3.82e-01 | 95.0% | 76.9% |
| 1u5tA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.85e-01 | 93.8% | 81.3% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.78e-01 | 93.8% | 82.7% |
| 1x8bA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 35.0 | 3.51e-01 | 100.0% | 69.0% |
| 2dchX02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 33.0 | 3.02e-01 | 100.0% | 48.6% |
| 4fppA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.50 | 42.0 | 3.48e-01 | 100.0% | 52.6% |
| 4b09B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 35.0 | 3.32e-01 | 97.5% | 60.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3935653 | 101.1.2.83 ↗ | alpha arrays › HTH › HTH › winged helix domain › SKA1 | 0.65 | 40.0 | 3.54e-01 | 98.8% | 41.7% |
| 2036590 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.64 | 38.0 | 4.21e-01 | 100.0% | 74.6% |
| 3739177 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.63 | 39.0 | 4.19e-01 | 100.0% | 75.4% |
| 4360928 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.62 | 38.0 | 4.05e-01 | 97.5% | 70.0% |
| 3786023 | 101.1.2.154 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C | 0.61 | 42.0 | 3.00e-01 | 100.0% | 23.7% |
| 3254217 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.61 | 37.0 | 4.03e-01 | 100.0% | 73.8% |
| 3877696 | 101.1.2.164 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 | 0.61 | 35.0 | 3.30e-01 | 100.0% | 45.0% |
| 3785728 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.60 | 37.0 | 3.99e-01 | 100.0% | 75.0% |
| 4994983 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.92e-01 | 100.0% | 70.0% |
| 3616697 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.98e-01 | 100.0% | 75.4% |
| 4096150 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.60 | 35.0 | 3.04e-01 | 100.0% | 36.8% |
| 3922338 | 101.1.2.512 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF25877 | 0.60 | 42.0 | 4.27e-01 | 100.0% | 75.0% |
| 5077205 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.97e-01 | 91.3% | 62.1% |
| 3174480 | 101.1.2.527 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_RGF3 | 0.59 | 45.0 | 4.08e-01 | 100.0% | 60.0% |
| 3936425 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.59 | 36.0 | 3.87e-01 | 100.0% | 73.8% |
| 3416370 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.59 | 36.0 | 3.85e-01 | 100.0% | 73.8% |
| 3869516 | 327.11.2.56 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF28453 | 0.58 | 35.0 | 3.81e-01 | 98.8% | 72.3% |
| 3596028 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.57 | 34.0 | 3.47e-01 | 100.0% | 57.5% |
| 3309236 | 101.1.2.245 ↗ | alpha arrays › HTH › HTH › winged helix domain › PORR | 0.57 | 36.0 | 2.59e-01 | 100.0% | 22.2% |
| 138903 | 101.1.2.232 ↗ | alpha arrays › HTH › HTH › winged helix domain › MLPTv-like_HTH | 0.57 | 36.0 | 3.17e-01 | 100.0% | 42.6% |
| 3187002 | 101.1.2.635 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDT1_C, PF26121 | 0.57 | 39.0 | 2.69e-01 | 100.0% | 19.4% |
| 3182652 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.56 | 35.0 | 3.54e-01 | 100.0% | 61.3% |
| 1910394 | 101.1.2.164 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFA2_Winged_2 | 0.56 | 33.0 | 3.58e-01 | 100.0% | 70.8% |
| 5003129 | 101.1.2.78 ↗ | alpha arrays › HTH › HTH › winged helix domain › AlkZ-like | 0.56 | 33.0 | 3.63e-01 | 97.5% | 72.3% |
| 3426878 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.55 | 40.0 | 3.81e-01 | 100.0% | 63.0% |
| 3519165 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 39.0 | 3.87e-01 | 98.8% | 70.6% |
| 5046227 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 3.69e-01 | 98.8% | 65.9% |
| 3602137 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.55 | 36.0 | 3.39e-01 | 100.0% | 55.8% |
| 3221396 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.55 | 35.0 | 3.85e-01 | 100.0% | 82.5% |
| 4935902 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.55 | 41.0 | 2.99e-01 | 97.5% | 27.7% |
| 3600806 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 37.0 | 4.06e-01 | 100.0% | 87.7% |
| 3385701 | 101.1.9.95 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF3972 | 0.54 | 31.0 | 3.56e-01 | 98.8% | 80.0% |
| 4996616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 4.04e-01 | 98.8% | 96.6% |
| 3709765 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 3.70e-01 | 100.0% | 75.7% |
| 4264297 | 101.1.2.760 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF30824 | 0.54 | 39.0 | 3.33e-01 | 100.0% | 45.9% |
| 3529866 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.54 | 35.0 | 3.73e-01 | 100.0% | 80.0% |
| 3710641 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.35e-01 | 98.8% | 55.0% |
| 4972648 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.53 | 39.0 | 2.72e-01 | 97.5% | 22.1% |
| 3781365 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.53 | 32.0 | 3.28e-01 | 100.0% | 61.3% |
| 3413690 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.53 | 38.0 | 3.80e-01 | 92.5% | 74.1% |
| 3534019 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.52 | 36.0 | 3.53e-01 | 100.0% | 64.4% |
| 4024455 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 38.0 | 3.71e-01 | 100.0% | 68.9% |
| 3818462 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.52 | 37.0 | 3.62e-01 | 93.8% | 67.8% |
| 3319155 | 101.1.4.12 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC | 0.52 | 37.0 | 2.64e-01 | 100.0% | 22.5% |
| 4961223 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 42.0 | 3.69e-01 | 97.5% | 60.0% |
| 3298593 | 109.4.1.43 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAC3_GANP | 0.50 | 39.0 | 2.78e-01 | 100.0% | 25.6% |
| 2512677 | 237.1.1.11 ↗ | a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › RES | 0.50 | 40.0 | 3.16e-01 | 90.0% | 83.6% |
| 3607426 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.50 | 43.0 | 3.11e-01 | 100.0% | 63.1% |