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NODE_12_length_310542_cov_175.846709.1__X__X__00324
Bact-VirNODE_12_length_310542_cov_175.846709.1__X__X__00324
Identity
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-83
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00147__D49-127
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.69 | 35.0 | 3.66e-01 | 76.8% | 50.6% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.69 | 47.0 | 4.09e-01 | 70.7% | 85.8% |
| 3o2iA00 | 3.30.70.2710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 48.0 | 4.64e-01 | 100.0% | 68.8% |
| 4i1sB00 | 4.10.80.340 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.63 | 34.0 | 4.08e-01 | 97.6% | 80.8% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.59 | 40.0 | 2.87e-01 | 70.7% | 57.0% |
| 3nhiA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.58 | 39.0 | 3.25e-01 | 70.7% | 79.2% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 27.0 | 3.73e-01 | 75.6% | 94.9% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.56 | 34.0 | 3.00e-01 | 96.3% | 41.9% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 45.0 | 4.72e-01 | 90.2% | 100.0% |
| 2damA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.55 | 31.0 | 3.37e-01 | 91.5% | 65.7% |
| 3htyA00 | 2.40.128.280 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 28.0 | 2.72e-01 | 95.1% | 44.7% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 43.0 | 2.99e-01 | 90.2% | 67.5% |
| 1x4oA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.51 | 30.0 | 3.14e-01 | 92.7% | 61.5% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.67e-01 | 91.5% | 95.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3993949 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.61 | 32.0 | 3.87e-01 | 100.0% | 86.7% |
| 4991257 | 304.139.1.1 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR | 0.60 | 45.0 | 3.08e-01 | 80.5% | 97.7% |
| 3997639 | 7563.1.1.0 ↗ | a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related | 0.58 | 41.0 | 2.73e-01 | 72.0% | 41.0% |
| 2393519 | 327.6.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane | 0.57 | 34.0 | 2.82e-01 | 84.1% | 31.1% |
| 4997962 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.57 | 42.0 | 3.08e-01 | 82.9% | 84.6% |
| 3433449 | 323.1.1.7 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Transferase | 0.56 | 45.0 | 3.08e-01 | 89.0% | 91.9% |
| 4242763 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.55 | 46.0 | 4.11e-01 | 97.6% | 93.6% |
| 5049862 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 31.0 | 2.40e-01 | 79.3% | 25.1% |
| None | — | 0.54 | 37.0 | 2.57e-01 | 97.6% | 20.7% | |
| 4223710 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.54 | 45.0 | 4.17e-01 | 97.6% | 98.2% |
| 3175336 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.53 | 41.0 | 4.27e-01 | 97.6% | 94.7% |
| 5038457 | 3054.1.1.0 ↗ | alpha arrays › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol › Insert all-alpha domain in prim-pol | 0.52 | 42.0 | 3.86e-01 | 96.3% | 99.2% |
| 4505972 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 39.0 | 2.68e-01 | 81.7% | 41.6% |
| 3967497 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.52 | 43.0 | 2.85e-01 | 97.6% | 98.6% |
| 4886283 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.51 | 39.0 | 2.91e-01 | 84.1% | 77.9% |
| 5026348 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.51 | 40.0 | 4.11e-01 | 98.8% | 88.7% |
| 3449886 | 2011.1.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M14 | 0.51 | 42.0 | 2.90e-01 | 95.1% | 86.3% |
| 4469533 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.51 | 38.0 | 2.79e-01 | 82.9% | 40.8% |
| 5001130 | 101.1.2.44 ↗ | alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 | 0.50 | 36.0 | 3.47e-01 | 97.6% | 65.0% |