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NODE_12_length_310542_cov_175.846709.1__X__X__00344

Bact-Vir

NODE_12_length_310542_cov_175.846709.1__X__X__00344

Identity

Kingdom:
phage

Quality

86.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-80
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.63e-01 100.0% 87.0%
3zx7A02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 48.0 4.06e-01 93.4% 97.1%
2mhgA00 2.20.130.30 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › Protein of unknown function DUF2782 0.55 41.0 4.18e-01 88.2% 81.3%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 40.0 4.17e-01 78.9% 100.0%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.53 36.0 2.92e-01 76.3% 34.6%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 3.91e-01 98.7% 89.3%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 45.0 3.87e-01 98.7% 90.1%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.97e-01 81.6% 90.9%
1yy3A02 2.40.10.240 Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like 0.51 36.0 3.36e-01 76.3% 81.8%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.50 39.0 3.20e-01 82.9% 57.6%
3a5pA00 2.60.200.70 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 40.0 3.69e-01 89.5% 69.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5043413 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 54.0 4.83e-01 100.0% 84.5%
3242245 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.56 39.0 4.17e-01 73.7% 100.0%
4958477 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.37e-01 90.8% 81.1%
3922383 79.1.1.27 ↗ beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › MORN 0.55 44.0 4.28e-01 89.5% 80.0%
5076709 247.1.1.17 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.52 41.0 3.03e-01 89.5% 93.0%
3292710 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.52 42.0 3.20e-01 89.5% 80.5%
3801895 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.06e-01 100.0% 76.5%
3776866 12.5.1.15 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FAM171A1-2-B_N 0.51 36.0 3.24e-01 75.0% 88.2%
5079380 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 36.0 3.24e-01 73.7% 87.3%
3690803 7102.1.1.0 ↗ a+b three layers › C-terminal segment in 5'->3' exoribonucleases › C-terminal segment in 5'->3' exoribonucleases › C-terminal segment in 5'->3' exoribonucleases 0.50 34.0 3.35e-01 71.1% 91.8%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.50 43.0 4.26e-01 93.4% 91.3%
3269848 12.1.1.23 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.50 40.0 3.35e-01 88.2% 85.9%