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NODE_12_length_310542_cov_175.846709.1__X__X__00351

Bact-Vir

NODE_12_length_310542_cov_175.846709.1__X__X__00351

Identity

Kingdom:
phage

Quality

78.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-39
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.85 60.0 3.54e-01 76.3% 10.5%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.82 71.0 5.43e-01 100.0% 43.2%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.82 58.0 4.16e-01 81.6% 28.4%
2ogiB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.80 67.0 4.27e-01 100.0% 21.2%
3dkqA02 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.79 68.0 6.37e-01 100.0% 87.2%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.79 62.0 5.06e-01 100.0% 46.4%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.78 55.0 4.41e-01 81.6% 39.7%
1gnlA01 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.78 66.0 4.50e-01 100.0% 27.3%
8kcaB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 60.0 3.90e-01 89.5% 19.9%
2p6nA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 55.0 3.58e-01 78.9% 18.1%
2lpeA01 6.10.140.1120 Special › Helix non-globular › Helix Hairpins › 0.75 64.0 5.11e-01 100.0% 48.7%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.75 62.0 4.37e-01 100.0% 35.7%
1xdxA01 3.30.1140.40 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 0.74 52.0 3.80e-01 78.9% 28.0%
3ccgA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.74 57.0 3.77e-01 100.0% 22.2%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 63.0 4.53e-01 100.0% 33.6%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.72 61.0 4.29e-01 100.0% 32.8%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.71 53.0 3.99e-01 81.6% 36.3%
2p67A03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 56.0 4.63e-01 86.8% 55.4%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 50.0 3.48e-01 89.5% 23.1%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.70 55.0 4.88e-01 100.0% 62.5%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 4.18e-01 94.7% 50.5%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.68 58.0 4.60e-01 97.4% 67.1%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 48.0 3.07e-01 84.2% 14.5%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.67 59.0 3.95e-01 100.0% 29.4%
1f35A00 2.60.120.390 Mainly Beta › Sandwich › Jelly Rolls › Olfactory marker 0.66 56.0 3.73e-01 100.0% 83.3%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 51.0 4.59e-01 92.1% 92.9%
2ds2D01 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.64 49.0 4.34e-01 81.6% 63.2%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 53.0 4.15e-01 97.4% 52.9%
2z6vA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.63 54.0 3.09e-01 97.4% 11.5%
1mzbA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 53.0 4.21e-01 100.0% 68.3%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 50.0 4.17e-01 94.7% 93.0%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 49.0 3.84e-01 100.0% 66.3%
3c1dA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 4.14e-01 86.8% 97.8%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 40.0 3.20e-01 76.3% 38.7%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.54 44.0 3.08e-01 100.0% 27.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040578 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.93 82.0 6.79e-01 100.0% 58.5%
4160719 6102.1.1.1 alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.92 82.0 5.27e-01 100.0% 23.7%
5039407 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.90 78.0 5.01e-01 100.0% 22.5%
3260684 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.89 78.0 6.94e-01 100.0% 72.7%
4396754 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.89 79.0 5.52e-01 100.0% 33.9%
3400028 3843.1.1.30 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF4781 0.89 77.0 5.92e-01 100.0% 44.7%
3553056 614.1.1.1 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 0.88 70.0 5.69e-01 89.5% 48.6%
4018255 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.87 76.0 4.14e-01 100.0% 6.8%
4145241 6102.1.1.1 alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.87 77.0 4.96e-01 100.0% 24.4%
4667967 6102.1.1.0 alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA 0.87 76.0 4.95e-01 100.0% 25.2%
4942157 6102.1.1.1 alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.86 75.0 5.12e-01 100.0% 29.2%
3380823 109.4.1.1146 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB 0.86 71.0 3.97e-01 97.4% 8.1%
4290529 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.86 73.0 5.26e-01 100.0% 34.5%
None 0.85 72.0 4.30e-01 100.0% 14.3%
3497418 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.85 75.0 5.47e-01 100.0% 39.0%
4508282 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.84 69.0 4.48e-01 94.7% 21.9%
4951462 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.83 69.0 4.96e-01 100.0% 33.9%
4634964 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.82 68.0 4.97e-01 100.0% 34.5%
4605138 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.82 69.0 4.94e-01 100.0% 33.0%
4124492 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.81 69.0 4.92e-01 100.0% 39.1%
4209288 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.81 69.0 4.95e-01 100.0% 33.0%
3682133 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.81 65.0 4.13e-01 100.0% 18.7%
4130073 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.81 65.0 4.82e-01 100.0% 34.5%
3811258 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.80 65.0 4.57e-01 97.4% 28.5%
3450792 632.1.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.79 67.0 4.71e-01 100.0% 30.4%
4931241 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.79 64.0 4.67e-01 100.0% 33.9%
3185917 375.1.9.12 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Wbp11 0.78 63.0 5.05e-01 100.0% 47.1%
4646933 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.78 61.0 5.13e-01 97.4% 52.0%
2485668 7025.1.1.2 alpha bundles › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9-LIN52 heterodimer › LIN9_C 0.78 64.0 5.12e-01 100.0% 70.2%
5020685 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.78 67.0 3.91e-01 100.0% 12.2%
3417174 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 66.0 4.47e-01 100.0% 26.4%
4209030 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.77 63.0 4.60e-01 100.0% 33.3%
3941013 2003.1.5.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.77 60.0 3.66e-01 94.7% 13.5%
3731064 633.6.1.0 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.77 62.0 4.62e-01 100.0% 34.5%
4270265 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.76 67.0 4.89e-01 100.0% 45.0%
3467921 109.4.1.883 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.76 63.0 3.67e-01 100.0% 20.3%
3315624 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.76 61.0 4.56e-01 100.0% 34.5%
3734558 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 61.0 3.22e-01 100.0% 3.3%
5078219 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.75 59.0 3.98e-01 100.0% 21.7%
4343661 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.75 59.0 4.42e-01 100.0% 34.2%
4023701 148.1.3.261 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small, AAA_lid_9 0.75 59.0 3.55e-01 100.0% 13.0%
3873692 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.74 61.0 5.39e-01 92.1% 100.0%
4177674 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.74 57.0 4.35e-01 100.0% 35.5%
4493879 4992.1.1.23 extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N 0.73 63.0 4.61e-01 100.0% 34.5%
4178402 1054.1.1.1 alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.73 59.0 3.53e-01 89.5% 13.7%
4019548 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.73 62.0 4.92e-01 94.7% 77.3%
3384920 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.73 61.0 6.08e-01 100.0% 97.5%
3252433 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 64.0 3.78e-01 100.0% 23.7%
3583169 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.73 60.0 4.89e-01 100.0% 50.0%
3598903 1038.1.1.0 alpha complex topology › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain 0.72 61.0 3.31e-01 100.0% 4.8%
4000148 605.2.1.0 alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 0.72 62.0 4.73e-01 100.0% 40.0%
3864815 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.72 56.0 4.28e-01 100.0% 36.1%
3331123 101.35.1.23 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Ovate 0.72 59.0 5.08e-01 92.1% 95.0%
3234731 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.72 61.0 5.06e-01 94.7% 84.6%
3468553 328.7.1.0 a+b two layers › IF3-like › Smr domain › Smr domain 0.71 62.0 4.11e-01 100.0% 25.5%
4000306 304.9.1.83 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1, RBM39linker 0.70 53.0 3.12e-01 94.7% 10.0%
3477418 4992.1.1.12 extended segments › RelB-like › RelB-like › RelB-like › LIN9_C 0.70 58.0 4.55e-01 100.0% 40.0%
3754639 150.5.1.106 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C 0.70 53.0 4.43e-01 100.0% 45.9%
3663500 109.4.1.1256 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 0.70 53.0 3.76e-01 100.0% 24.8%
3840952 601.19.1.39 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C 0.67 54.0 4.53e-01 100.0% 52.0%
3700656 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.66 53.0 4.04e-01 100.0% 60.0%
3899274 109.4.1.108 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CTNNBL 0.65 59.0 3.24e-01 100.0% 15.0%