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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00021

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00021

Identity

Kingdom:
phage

Quality

81.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-67
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yv9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 48.0 3.89e-01 80.6% 47.0%
1kn1B00 1.10.490.20 Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins 0.63 52.0 3.93e-01 91.0% 42.2%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.62 47.0 3.90e-01 79.1% 54.0%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 44.0 3.80e-01 74.6% 78.6%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.60 46.0 3.85e-01 82.1% 56.9%
1z9hA03 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 41.0 3.22e-01 73.1% 94.7%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 49.0 4.67e-01 98.5% 91.1%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 49.0 3.71e-01 100.0% 58.5%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 43.0 3.61e-01 82.1% 55.3%
6vw7B03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.56 44.0 4.17e-01 100.0% 71.4%
7z7vF03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.53 42.0 3.92e-01 100.0% 69.3%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3510214 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.57 46.0 3.39e-01 92.5% 91.0%
4679982 2007.1.14.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.55 43.0 3.43e-01 92.5% 82.5%
D2 high residues 75-143
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iqpA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 52.0 5.33e-01 100.0% 96.9%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.62 38.0 4.32e-01 73.9% 82.7%
1vsgA02 1.10.470.10 Mainly Alpha › Orthogonal Bundle › Variant Surface Glycoprotein, subunit A; domain 2 › Variant Surface Glycoprotein, subunit A, domain 2 0.60 44.0 3.39e-01 78.3% 91.8%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 49.0 3.34e-01 98.6% 82.5%
1guxB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 49.0 3.89e-01 100.0% 61.7%
8actF02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 35.0 3.63e-01 75.4% 71.4%
1ej5A00 3.90.810.10 Alpha Beta › Alpha-Beta Complex › SerineThreonine-protein kinase PAK-alpha; Chain A › CRIB domain 0.52 42.0 3.78e-01 94.2% 82.2%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 42.0 3.68e-01 94.2% 85.2%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.51 41.0 3.87e-01 95.7% 84.1%
2r18A01 1.10.150.620 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Capsid protein VP3, domain 1 0.51 40.0 4.00e-01 92.8% 82.9%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3370183 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 57.0 5.52e-01 100.0% 78.8%
3465065 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 55.0 5.38e-01 100.0% 82.7%
4015710 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 59.0 5.58e-01 100.0% 81.2%
3721411 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 56.0 5.41e-01 100.0% 83.7%
3439731 148.1.3.1 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NB-ARC 0.64 50.0 4.08e-01 95.7% 44.3%
3407327 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.61 45.0 4.27e-01 76.8% 66.3%
3739729 132.1.1.1 ↗ alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding 0.58 39.0 3.68e-01 95.7% 56.5%
3597307 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 40.0 3.81e-01 76.8% 60.0%
3924484 108.1.1.29 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.56 39.0 3.79e-01 88.4% 63.7%
3444967 108.1.1.28 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.51 42.0 3.75e-01 98.6% 80.0%