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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00027

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00027

Identity

Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 22-45_65-128
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bc1B00 6.10.250.3000 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.72 30.0 3.79e-01 100.0% 63.5%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 43.0 4.02e-01 84.1% 97.4%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.52 41.0 3.08e-01 85.2% 78.2%
1gcbA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 38.0 2.53e-01 81.8% 92.3%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3574069 604.12.1.62 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DuoxA 0.67 34.0 3.05e-01 100.0% 35.2%
3616235 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 24.0 2.50e-01 100.0% 38.7%
4948723 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.58 27.0 3.49e-01 71.6% 75.0%
3687833 5073.1.1.18 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Hydrolase 0.53 45.0 2.77e-01 96.6% 44.3%
5010522 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 36.0 3.59e-01 70.5% 76.4%
5019927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.41e-01 71.6% 68.4%
1902434 7524.1.1.1 ↗ a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.51 41.0 2.92e-01 90.9% 50.9%
D2 medium residues 46-64_129-178
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 33.0 3.33e-01 78.3% 52.1%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 34.0 3.24e-01 78.3% 46.4%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 35.0 3.23e-01 81.2% 47.1%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 31.0 2.89e-01 81.2% 40.4%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.54 38.0 3.69e-01 76.8% 65.9%
2pg4A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 33.0 3.07e-01 78.3% 46.2%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 2.96e-01 71.0% 61.9%
3f4sA02 1.10.40.80 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.53 35.0 3.66e-01 87.0% 75.0%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.11e-01 81.2% 88.0%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 42.0 2.90e-01 98.6% 48.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3351739 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 43.0 3.31e-01 72.5% 89.1%
4559677 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 35.0 3.55e-01 76.8% 57.1%
3479827 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 36.0 3.29e-01 76.8% 46.6%
5032459 101.1.2.297 ↗ alpha arrays › HTH › HTH › winged helix domain › Mrr_N 0.57 33.0 3.21e-01 78.3% 48.8%
5070090 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.56 38.0 3.43e-01 72.5% 92.0%
4029108 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.30e-01 72.5% 93.6%
3844118 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 46.0 3.32e-01 100.0% 75.7%
3952617 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.54 37.0 3.34e-01 72.5% 97.0%
3972274 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.38e-01 71.0% 100.0%
5031315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 3.44e-01 72.5% 67.1%
4016908 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 37.0 3.02e-01 78.3% 76.0%
4533897 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.52 37.0 3.02e-01 79.7% 70.7%
3250194 5081.1.1.2 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DER1 0.51 38.0 2.78e-01 81.2% 48.3%
3371034 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 3.28e-01 97.1% 93.5%
3923371 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 40.0 2.66e-01 92.8% 64.0%
5015083 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 33.0 3.21e-01 78.3% 58.7%