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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00037

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00037

Identity

Kingdom:
phage

Quality

70.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 40.0 2.97e-01 80.0% 60.8%
4mt1A02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.55 46.0 3.86e-01 98.2% 89.3%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.52 38.0 3.97e-01 100.0% 94.0%
2dtgE06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.34e-01 100.0% 46.6%
1jroA01 3.10.20.30 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain 0.51 40.0 3.73e-01 100.0% 86.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 48.0 4.77e-01 98.2% 81.7%
3244834 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.57 43.0 3.63e-01 100.0% 45.5%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.55 45.0 4.42e-01 100.0% 98.3%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.53 45.0 4.45e-01 100.0% 95.0%
4583560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 38.0 4.08e-01 98.2% 100.0%