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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00042

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00042

Identity

Kingdom:
phage

Quality

86.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-81
PDB
CATH (59)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 40.0 4.71e-01 93.8% 87.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 5.02e-01 96.2% 100.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 4.62e-01 100.0% 74.0%
1m1gB03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.94e-01 98.8% 88.9%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.50e-01 100.0% 75.4%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 46.0 4.72e-01 100.0% 75.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 41.0 4.51e-01 98.8% 79.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.90e-01 100.0% 96.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.69e-01 95.0% 96.1%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.63 37.0 4.47e-01 93.8% 95.8%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 54.0 4.12e-01 100.0% 99.5%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 4.52e-01 98.8% 81.8%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.61e-01 98.8% 91.5%
3k67A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 42.0 3.39e-01 70.0% 81.4%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 40.0 4.20e-01 97.5% 73.2%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 49.0 4.88e-01 100.0% 82.1%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 53.0 4.23e-01 100.0% 68.6%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 45.0 4.09e-01 77.5% 89.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 4.12e-01 100.0% 65.8%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 55.0 4.02e-01 100.0% 37.9%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.61 55.0 4.20e-01 100.0% 43.8%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 54.0 3.98e-01 100.0% 86.4%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 37.0 3.61e-01 93.8% 54.4%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.48e-01 97.5% 91.5%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 41.0 3.91e-01 100.0% 58.0%
4tkoB01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 44.0 4.21e-01 100.0% 67.4%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 43.0 3.87e-01 76.2% 94.7%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 50.0 4.48e-01 96.2% 77.1%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 4.54e-01 96.2% 98.2%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 49.0 4.18e-01 96.2% 76.1%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.58 50.0 3.92e-01 97.5% 87.6%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.58 50.0 4.59e-01 100.0% 96.3%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 52.0 3.96e-01 100.0% 78.2%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.75e-01 98.8% 85.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.58 43.0 4.57e-01 100.0% 95.5%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.57 40.0 3.20e-01 100.0% 33.9%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.57 43.0 4.47e-01 90.0% 89.0%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.89e-01 100.0% 78.9%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 50.0 4.14e-01 100.0% 70.2%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 50.0 4.26e-01 100.0% 81.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 4.03e-01 100.0% 78.3%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.54 46.0 4.33e-01 93.8% 86.0%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.54 45.0 4.09e-01 96.2% 77.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 3.87e-01 98.8% 93.3%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.40e-01 81.2% 90.1%
2vf9A00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 44.0 3.78e-01 91.3% 87.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 38.0 2.95e-01 76.2% 84.2%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 42.0 3.86e-01 100.0% 65.4%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.03e-01 95.0% 84.7%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 4.21e-01 100.0% 97.0%
1wjsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 47.0 4.07e-01 98.8% 73.2%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 46.0 3.96e-01 95.0% 95.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 48.0 4.52e-01 98.8% 85.4%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.41e-01 91.3% 62.5%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.52 45.0 3.86e-01 98.8% 75.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.08e-01 77.5% 81.8%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.51 39.0 3.75e-01 85.0% 72.4%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.50 38.0 3.38e-01 82.5% 78.2%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 38.0 3.36e-01 85.0% 99.2%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.68e-01 100.0% 80.0%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 45.0 5.51e-01 86.3% 95.9%
4027422 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.71 45.0 5.22e-01 97.5% 92.7%
3620554 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 4.47e-01 98.8% 60.0%
3967347 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 50.0 5.16e-01 100.0% 84.0%
3387360 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 45.0 4.42e-01 100.0% 63.5%
3638174 4.1.1.320 beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.68 45.0 4.26e-01 98.8% 56.8%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.68 52.0 3.40e-01 100.0% 20.3%
3452625 1.1.7.69 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.67 46.0 4.32e-01 100.0% 57.0%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 43.0 4.97e-01 97.5% 94.5%
3709029 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.91e-01 98.8% 90.0%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 44.0 4.31e-01 98.8% 64.7%
3660922 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.65 44.0 4.78e-01 98.8% 84.6%
3581896 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.65 43.0 4.75e-01 100.0% 84.6%
3169607 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.65 41.0 4.27e-01 97.5% 68.0%
4318415 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 47.0 4.47e-01 76.2% 94.7%
3398496 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 41.0 4.78e-01 98.8% 94.5%
4121981 4.1.1.325 beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.64 44.0 3.77e-01 100.0% 44.8%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.64 42.0 4.92e-01 98.8% 100.0%
3931905 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 44.0 3.92e-01 100.0% 49.6%
1905738 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.64 49.0 3.96e-01 100.0% 43.9%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 44.0 3.47e-01 100.0% 35.6%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.64 43.0 3.49e-01 100.0% 37.3%
4654204 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.64 48.0 4.65e-01 100.0% 71.9%
3298989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.87e-01 100.0% 50.9%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 42.0 4.68e-01 100.0% 90.0%
3928711 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.36e-01 100.0% 68.2%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 39.0 4.52e-01 93.8% 90.9%
3454710 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.63 46.0 3.32e-01 77.5% 55.9%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 42.0 3.77e-01 100.0% 50.0%
2137682 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.62 45.0 4.18e-01 76.2% 97.1%
3296140 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 55.0 3.41e-01 100.0% 18.9%
7408 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.61 55.0 4.19e-01 100.0% 44.3%
166794 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.61 54.0 3.94e-01 100.0% 84.8%
3595169 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.93e-01 97.5% 94.3%
3884661 4.1.1.382 beta barrels › SH3 › SH3 › SH3 › PF31078 0.60 51.0 4.59e-01 100.0% 67.3%
3507639 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 43.0 4.53e-01 100.0% 87.1%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.88e-01 98.8% 97.1%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.60 47.0 3.49e-01 87.5% 82.3%
3598532 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.60 54.0 3.96e-01 100.0% 38.5%
4078120 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.60 40.0 4.60e-01 96.2% 100.0%
4680746 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.59 43.0 4.50e-01 97.5% 82.7%
3694574 5.1.4.31 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.59 45.0 2.81e-01 83.7% 22.0%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.59 44.0 4.58e-01 96.2% 85.3%
3658750 220.1.1.78 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.59 49.0 4.35e-01 97.5% 76.0%
3492757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 44.0 4.68e-01 100.0% 92.9%
3792948 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 48.0 4.42e-01 95.0% 79.1%
3819397 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.58 44.0 4.43e-01 100.0% 80.0%
3866571 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.58 50.0 3.11e-01 93.8% 35.5%
3950458 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.58 40.0 3.07e-01 71.2% 45.0%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.01e-01 100.0% 69.4%
4505316 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.41e-01 100.0% 96.7%
5063188 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.58 44.0 3.20e-01 81.2% 38.6%
4969694 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.58 51.0 4.02e-01 100.0% 96.5%
4466506 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.65e-01 100.0% 92.0%
3595833 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 44.0 4.24e-01 100.0% 71.6%
4114121 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.57 44.0 4.46e-01 100.0% 83.7%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.63e-01 100.0% 92.0%
3907190 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.56 43.0 4.14e-01 100.0% 71.6%
3973655 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 48.0 3.68e-01 100.0% 43.4%
3377696 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 44.0 3.26e-01 85.0% 40.5%
565 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.55 50.0 4.26e-01 100.0% 81.9%
3645174 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 39.0 3.15e-01 76.2% 85.1%
1778160 109.1.1.6 alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C_2 0.55 38.0 2.83e-01 100.0% 25.0%
3600139 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.14e-01 98.8% 69.1%
3393319 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.54 44.0 3.96e-01 90.0% 64.5%
5019857 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.54 47.0 3.59e-01 100.0% 83.0%
3447771 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.54 42.0 3.02e-01 85.0% 44.2%
4002813 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 44.0 3.78e-01 95.0% 69.3%
3690549 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 39.0 4.09e-01 100.0% 90.0%
4030940 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.54 45.0 3.62e-01 100.0% 47.7%
3196424 1.1.17.4 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.53 44.0 3.09e-01 93.8% 90.5%
3339169 4.1.1.415 beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.52 43.0 4.30e-01 100.0% 88.2%
3214327 10.1.1.4 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.52 46.0 3.87e-01 100.0% 89.6%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 41.0 4.11e-01 100.0% 83.5%
1161129 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.51 40.0 3.59e-01 83.7% 82.1%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 44.0 4.32e-01 97.5% 90.6%
D2 high residues 88-183
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07463.17 best NUMOD4 34.3 3.00e-08 45.8% 95.9%