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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00103
Bact-VirNODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00103
Identity
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-172
Domain cluster:
rep: NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00103__D235-382
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.71 | 24.0 | 3.69e-01 | 72.2% | 71.6% |
| 2xc8A00 | 2.60.40.2980 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 31.0 | 3.45e-01 | 89.4% | 53.7% |
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.64 | 31.0 | 4.31e-01 | 70.2% | 95.8% |
| 4h9nC00 | 1.20.58.2170 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 30.0 | 2.76e-01 | 76.2% | 40.5% |
| 6p3xB01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.50 | 39.0 | 3.78e-01 | 83.4% | 91.0% |
D2
high
residues 235-382
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5utkA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 28.0 | 3.58e-01 | 98.0% | 73.5% |
| 4n5uA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 31.0 | 3.60e-01 | 98.0% | 66.7% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 30.0 | 3.38e-01 | 75.7% | 63.1% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 30.0 | 3.61e-01 | 98.0% | 75.3% |
| 6mfaA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 28.0 | 3.57e-01 | 98.0% | 81.0% |
| 3ndcA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.54 | 38.0 | 4.07e-01 | 96.6% | 85.4% |
| 3nutB02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 37.0 | 3.95e-01 | 96.6% | 82.0% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 31.0 | 3.38e-01 | 88.5% | 72.0% |
| 1blwA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 32.0 | 3.80e-01 | 97.3% | 93.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4440636 | 4959.1.1.1 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3 | 0.62 | 27.0 | 2.77e-01 | 91.9% | 40.7% |
| 4152523 | 11.1.1.129 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Interfer-bind | 0.56 | 31.0 | 3.61e-01 | 98.0% | 76.0% |
| 3887023 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 32.0 | 3.48e-01 | 97.3% | 72.6% |
D3
high
residues 499-649
Domain cluster:
rep: PHAGE-A3--js4906-20-2_S1_scaffold_104-98_curated_closed_complete_prodigal-single.1__X__X__00353__D12-188
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 28.0 | 4.04e-01 | 74.2% | 98.4% |
| 2acxA01 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.61 | 37.0 | 3.39e-01 | 94.0% | 44.4% |
| 6dewA01 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 42.0 | 3.95e-01 | 77.5% | 75.8% |
| 2a72A00 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.57 | 33.0 | 3.51e-01 | 91.4% | 62.4% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 31.0 | 3.95e-01 | 78.1% | 100.0% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 37.0 | 3.82e-01 | 72.8% | 93.9% |
| 1kz7A01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.52 | 43.0 | 3.99e-01 | 90.1% | 69.4% |
| 1b48A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.52 | 34.0 | 3.81e-01 | 76.8% | 89.0% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.52 | 36.0 | 3.78e-01 | 84.8% | 78.9% |
| 6gy8A01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.51 | 45.0 | 3.56e-01 | 98.7% | 99.4% |
| 6m37B01 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.51 | 25.0 | 3.07e-01 | 78.1% | 71.4% |
| 2qvaA01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.50 | 34.0 | 3.64e-01 | 80.1% | 79.1% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4955748 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.55 | 29.0 | 3.57e-01 | 76.2% | 82.2% |
| 3940580 | 604.6.1.14 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › RasGAP_C | 0.53 | 33.0 | 3.70e-01 | 76.8% | 80.9% |
| 3239393 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 34.0 | 3.86e-01 | 76.2% | 88.2% |
| 3245544 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.51 | 33.0 | 3.62e-01 | 77.5% | 82.6% |
| 3386043 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.50 | 31.0 | 3.22e-01 | 98.7% | 62.8% |
| 3228341 | 604.1.1.55 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › RasGAP_C | 0.50 | 31.0 | 3.46e-01 | 76.2% | 78.3% |
| 4927849 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.50 | 36.0 | 3.66e-01 | 83.4% | 75.9% |
D4
medium
residues 448-498
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.96 | 75.0 | 5.96e-01 | 82.4% | 45.7% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.95 | 77.0 | 5.41e-01 | 86.3% | 31.9% |
| 1nfvA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.93 | 80.0 | 5.37e-01 | 92.2% | 27.8% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.93 | 72.0 | 5.21e-01 | 82.4% | 33.3% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.91 | 73.0 | 5.09e-01 | 86.3% | 29.7% |
| 2gs4A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.91 | 82.0 | 5.60e-01 | 100.0% | 31.6% |
| 3t9jA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.90 | 72.0 | 5.09e-01 | 86.3% | 30.6% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.90 | 71.0 | 4.94e-01 | 84.3% | 28.9% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.90 | 82.0 | 6.01e-01 | 100.0% | 42.7% |
| 1vmgA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.90 | 69.0 | 5.79e-01 | 82.4% | 51.2% |
| 1wcrA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.89 | 80.0 | 6.23e-01 | 98.0% | 49.5% |
| 1vh6A01 | 6.10.140.1940 | Special › Helix non-globular › Helix Hairpins › | 0.89 | 79.0 | 6.25e-01 | 96.1% | 50.5% |
| 3kwoA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.89 | 74.0 | 5.16e-01 | 94.1% | 30.9% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.89 | 62.0 | 5.67e-01 | 78.4% | 57.8% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.88 | 62.0 | 6.23e-01 | 78.4% | 73.1% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.87 | 71.0 | 5.38e-01 | 88.2% | 39.8% |
| 3r2kA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 78.0 | 5.41e-01 | 100.0% | 35.1% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.85 | 73.0 | 5.76e-01 | 96.1% | 50.0% |
| 4ebjA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.85 | 67.0 | 4.87e-01 | 84.3% | 33.1% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 78.0 | 5.41e-01 | 100.0% | 34.2% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 72.0 | 6.56e-01 | 98.0% | 76.8% |
| 6lpfA01 | 1.10.730.20 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › | 0.83 | 66.0 | 4.55e-01 | 86.3% | 27.0% |
| 2gz6A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.80 | 69.0 | 4.00e-01 | 92.2% | 31.5% |
| 2dfkC01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.79 | 70.0 | 4.58e-01 | 100.0% | 24.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 63.0 | 5.13e-01 | 92.2% | 48.4% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.78 | 62.0 | 4.71e-01 | 88.2% | 37.2% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.76 | 62.0 | 4.33e-01 | 94.1% | 27.4% |
| 1luwA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.73 | 58.0 | 5.48e-01 | 92.2% | 73.4% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 61.0 | 5.56e-01 | 100.0% | 76.1% |
| 4k51B00 | 1.25.40.860 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.71 | 60.0 | 4.30e-01 | 100.0% | 66.7% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.70 | 58.0 | 4.53e-01 | 98.0% | 56.7% |
| 2pz9A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 50.0 | 3.41e-01 | 96.1% | 33.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3906819 | 192.17.1.6 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 | 0.97 | 83.0 | 5.65e-01 | 90.2% | 30.7% |
| 3753240 | 3291.1.1.54 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › CC2D1A-B_DM14 | 0.96 | 82.0 | 5.47e-01 | 90.2% | 27.1% |
| 3560750 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.96 | 82.0 | 7.25e-01 | 90.2% | 65.7% |
| 3961063 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.96 | 82.0 | 4.93e-01 | 90.2% | 16.1% |
| 3470615 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.96 | 68.0 | 4.22e-01 | 74.5% | 15.8% |
| 4966900 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.95 | 72.0 | 6.58e-01 | 80.4% | 63.1% |
| 5025189 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.94 | 81.0 | 7.93e-01 | 92.2% | 87.3% |
| 3362472 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.94 | 79.0 | 5.95e-01 | 90.2% | 41.8% |
| 3336677 | 605.1.1.132 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF641 | 0.93 | 78.0 | 6.77e-01 | 90.2% | 61.3% |
| 1175575 | 109.4.1.292 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like | 0.93 | 66.0 | 6.36e-01 | 74.5% | 66.7% |
| 5012657 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.92 | 82.0 | 6.51e-01 | 96.1% | 52.6% |
| 4930709 | 3877.1.1.0 ↗ | alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC | 0.92 | 85.0 | 5.51e-01 | 100.0% | 27.2% |
| 3410968 | 192.17.1.0 ↗ | alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like | 0.91 | 78.0 | 6.93e-01 | 92.2% | 67.1% |
| 3694558 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.91 | 84.0 | 5.69e-01 | 100.0% | 33.9% |
| 4426045 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.91 | 84.0 | 5.87e-01 | 100.0% | 36.6% |
| 3412599 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.90 | 76.0 | 4.55e-01 | 92.2% | 14.8% |
| 140767 | 632.8.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › DUF6853 | 0.90 | 82.0 | 6.01e-01 | 100.0% | 42.7% |
| 3738041 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.89 | 79.0 | 6.53e-01 | 96.1% | 58.8% |
| 4489484 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.89 | 82.0 | 4.71e-01 | 100.0% | 12.1% |
| 3965106 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.86 | 78.0 | 6.79e-01 | 100.0% | 70.7% |
| 3802332 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.84 | 72.0 | 5.80e-01 | 98.0% | 51.0% |
| 5060868 | 140.1.1.9 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_3 | 0.80 | 67.0 | 4.64e-01 | 96.1% | 28.2% |
| 3292649 | 1075.5.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter › MatE | 0.78 | 68.0 | 4.81e-01 | 98.0% | 40.6% |
| 4937924 | 632.18.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 | 0.72 | 58.0 | 4.99e-01 | 92.2% | 56.2% |
D5
medium
residues 655-751
Domain cluster:
rep: 5H_04062016_scaffold_1_prodigal-single.1__X__X__00062__D179-260
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.87 | 60.0 | 6.23e-01 | 71.1% | 89.1% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.79 | 54.0 | 5.81e-01 | 70.1% | 84.5% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.73 | 51.0 | 4.78e-01 | 72.2% | 100.0% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.71 | 49.0 | 4.62e-01 | 71.1% | 80.5% |
| 2zxqA06 | 1.20.1270.70 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle | 0.69 | 44.0 | 5.20e-01 | 75.3% | 95.5% |
| 2y44A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.69 | 49.0 | 3.94e-01 | 73.2% | 91.8% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.69 | 45.0 | 4.32e-01 | 75.3% | 57.5% |
| 3gn4A00 | 6.10.220.10 | Special › Helix non-globular › Helical scaffold and wing domains of SecA › | 0.67 | 45.0 | 4.11e-01 | 70.1% | 51.9% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.63 | 47.0 | 4.42e-01 | 79.4% | 82.4% |
| 4h3tA02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.62 | 42.0 | 3.77e-01 | 70.1% | 91.5% |
| 3hhcC00 | 1.20.1250.60 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interferon lambda | 0.58 | 46.0 | 3.94e-01 | 84.5% | 59.6% |
| 4mhlA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.57 | 40.0 | 3.40e-01 | 71.1% | 56.5% |
| 4o7oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.56 | 46.0 | 3.51e-01 | 90.7% | 75.7% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.56 | 41.0 | 3.62e-01 | 79.4% | 91.3% |
| 1aluA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.55 | 43.0 | 3.61e-01 | 81.4% | 66.2% |
| 1cnt200 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 41.0 | 3.79e-01 | 82.5% | 74.6% |
| 1w36B04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.52 | 38.0 | 3.38e-01 | 78.4% | 71.2% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.51 | 40.0 | 3.27e-01 | 83.5% | 92.3% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3939086 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.77 | 55.0 | 3.62e-01 | 73.2% | 86.2% |
| 4946174 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 48.0 | 5.01e-01 | 72.2% | 70.0% |
| 3740259 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.70 | 48.0 | 4.02e-01 | 70.1% | 58.7% |
| 1509376 | 3860.1.1.4 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › MYO6_lever | 0.67 | 45.0 | 4.11e-01 | 70.1% | 51.9% |
| 3783885 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.66 | 42.0 | 4.72e-01 | 79.4% | 82.7% |
| 4364069 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.66 | 50.0 | 4.64e-01 | 81.4% | 95.2% |
| 3466334 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.65 | 45.0 | 4.14e-01 | 72.2% | 71.5% |
| 3597161 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.62 | 42.0 | 4.48e-01 | 70.1% | 88.2% |
| 3216082 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 43.0 | 4.09e-01 | 72.2% | 76.5% |
| 5023515 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.61 | 47.0 | 3.18e-01 | 81.4% | 33.7% |
| 3991608 | 109.4.1.102 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › WAPL | 0.54 | 43.0 | 2.81e-01 | 83.5% | 52.4% |
| 3244409 | 3914.1.1.0 ↗ | alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain | 0.51 | 40.0 | 3.57e-01 | 84.5% | 84.3% |