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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00110
Bact-VirNODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00110
Identity
- Kingdom:
- phage
Quality
61.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 134-189
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.80 | 42.0 | 3.95e-01 | 87.5% | 43.9% |
| 4ii2A04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 49.0 | 3.33e-01 | 91.1% | 86.7% |
| 4nozB01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 38.0 | 3.87e-01 | 78.6% | 64.8% |
| 2v8qB00 | 6.20.250.60 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.61 | 43.0 | 3.96e-01 | 75.0% | 80.8% |
| 5m8cB01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.18e-01 | 100.0% | 85.4% |
| 5wbyC01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 41.0 | 2.56e-01 | 73.2% | 36.7% |
| 3rm5B01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 49.0 | 3.15e-01 | 100.0% | 34.9% |
| 4nsxA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 41.0 | 2.61e-01 | 80.4% | 75.6% |
| 3mmyA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 39.0 | 2.47e-01 | 80.4% | 73.2% |
| 2ysiA01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 29.0 | 3.45e-01 | 80.4% | 84.8% |
| 2rbcA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 42.0 | 2.73e-01 | 96.4% | 96.7% |
| 1g5hB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 37.0 | 3.04e-01 | 78.6% | 53.3% |
| 2i4lB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 40.0 | 3.28e-01 | 85.7% | 87.1% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 35.0 | 2.85e-01 | 94.6% | 34.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1396826 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.78 | 42.0 | 3.94e-01 | 89.3% | 44.8% |
| 4998697 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 39.0 | 3.88e-01 | 85.7% | 48.3% |
| 3511200 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.65 | 39.0 | 3.46e-01 | 96.4% | 40.0% |
| 3907533 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.63 | 36.0 | 4.05e-01 | 89.3% | 77.5% |
| 3940294 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.62 | 43.0 | 2.48e-01 | 73.2% | 24.5% |
| 3935617 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.61 | 44.0 | 2.69e-01 | 76.8% | 33.2% |
| 3833006 | 5.1.3.67 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 | 0.59 | 49.0 | 3.13e-01 | 96.4% | 48.7% |
| 3253285 | 304.8.1.76 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF28943 | 0.58 | 35.0 | 2.77e-01 | 73.2% | 26.7% |
| 3518032 | 2003.1.2.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like | 0.58 | 41.0 | 2.51e-01 | 75.0% | 80.0% |
| 3820829 | 5.1.5.66 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 | 0.57 | 47.0 | 2.98e-01 | 92.9% | 89.5% |
| 4946598 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 44.0 | 2.86e-01 | 91.1% | 39.7% |
| 3873021 | 5.1.5.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N | 0.55 | 39.0 | 2.32e-01 | 76.8% | 55.5% |
| 3425088 | 145.1.1.3 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like | 0.54 | 34.0 | 3.33e-01 | 92.9% | 55.4% |
| 3928816 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 40.0 | 2.46e-01 | 78.6% | 18.9% |
| 3912572 | 5.1.5.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep | 0.54 | 46.0 | 2.70e-01 | 98.2% | 56.1% |
| 4477176 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.54 | 42.0 | 3.62e-01 | 83.9% | 89.4% |
| 4554167 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.54 | 31.0 | 2.94e-01 | 78.6% | 44.3% |
| 3384630 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.53 | 38.0 | 2.58e-01 | 78.6% | 81.2% |
| 4028139 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.53 | 33.0 | 3.37e-01 | 80.4% | 63.6% |
| 4868007 | 5.1.2.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › NHL | 0.53 | 37.0 | 2.42e-01 | 73.2% | 46.1% |
| 3404953 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.53 | 30.0 | 3.34e-01 | 80.4% | 72.5% |
| 3805053 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.52 | 41.0 | 2.71e-01 | 92.9% | 76.9% |
| 3975425 | 3844.1.1.1 ↗ | a+b two layers › hydrogenase expression protein-like › hydrogenase expression protein-like › hydrogenase expression protein › HupH_C | 0.52 | 42.0 | 3.59e-01 | 100.0% | 94.3% |
| 3803894 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 40.0 | 3.84e-01 | 100.0% | 86.7% |
| 1558818 | 2.1.1.120 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dis32-like_C | 0.51 | 30.0 | 3.50e-01 | 91.1% | 89.2% |
| 4275104 | 7502.1.1.0 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS | 0.51 | 40.0 | 3.21e-01 | 87.5% | 73.9% |
| 3191760 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 43.0 | 2.85e-01 | 100.0% | 64.9% |
| 3823160 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.51 | 40.0 | 2.64e-01 | 98.2% | 78.1% |
| 3507504 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.51 | 30.0 | 3.21e-01 | 78.6% | 66.7% |
| 2354 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.50 | 30.0 | 3.19e-01 | 78.6% | 67.4% |
| 2323730 | 9.1.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › META | 0.50 | 35.0 | 2.87e-01 | 94.6% | 35.5% |
| 3259509 | 5.1.4.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 | 0.50 | 38.0 | 2.32e-01 | 80.4% | 28.6% |
D2
medium
residues 370-450
Domain cluster:
rep: RifSed_csp1_19ft_3_scaffold_4_curated_prodigal-single.1__X__X__00103__D327-417
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.77 | 53.0 | 4.78e-01 | 71.6% | 57.8% |
| 4kjmA02 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.75 | 49.0 | 5.67e-01 | 70.4% | 100.0% |
| 2wgmA01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.72 | 52.0 | 5.20e-01 | 76.5% | 81.7% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 65.0 | 5.86e-01 | 100.0% | 100.0% |
| 3b8mC02 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 47.0 | 4.31e-01 | 70.4% | 53.8% |
| 4q20A01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.68 | 48.0 | 4.83e-01 | 74.1% | 81.7% |
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.66 | 59.0 | 5.37e-01 | 98.8% | 80.2% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 49.0 | 4.43e-01 | 77.8% | 61.9% |
| 3um7A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 47.0 | 4.36e-01 | 87.7% | 59.2% |
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 46.0 | 4.19e-01 | 74.1% | 67.0% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 44.0 | 3.52e-01 | 71.6% | 98.8% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 41.0 | 4.59e-01 | 71.6% | 88.1% |
| 4yzrA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.63 | 52.0 | 3.31e-01 | 88.9% | 34.3% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 42.0 | 4.27e-01 | 70.4% | 75.3% |
| 3o3mB01 | 1.20.1270.370 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.62 | 50.0 | 4.67e-01 | 88.9% | 70.9% |
| 3kbbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.62 | 37.0 | 3.98e-01 | 71.6% | 68.6% |
| 1xwjA01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.59 | 44.0 | 3.85e-01 | 81.5% | 70.8% |
| 3t8vA05 | 1.25.50.10 | Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain | 0.58 | 41.0 | 2.69e-01 | 72.8% | 28.6% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 40.0 | 4.09e-01 | 71.6% | 74.4% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.58 | 43.0 | 3.99e-01 | 79.0% | 83.7% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.55 | 39.0 | 3.93e-01 | 76.5% | 79.8% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 41.0 | 2.97e-01 | 86.4% | 34.4% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.52 | 37.0 | 2.95e-01 | 72.8% | 73.0% |
| 2g47A04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 36.0 | 2.69e-01 | 75.3% | 72.9% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4468389 | 5086.1.1.101 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › SH3BP5 | 0.82 | 56.0 | 4.80e-01 | 70.4% | 60.8% |
| 4284927 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.75 | 51.0 | 5.82e-01 | 76.5% | 98.3% |
| 4541653 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.74 | 52.0 | 4.93e-01 | 72.8% | 74.7% |
| 3401996 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.74 | 53.0 | 5.82e-01 | 75.3% | 100.0% |
| 3290965 | 605.1.1.4 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 | 0.73 | 50.0 | 4.82e-01 | 70.4% | 67.8% |
| 4549030 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.73 | 53.0 | 5.68e-01 | 82.7% | 90.0% |
| 3737217 | 103.1.1.9 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › HBS1_N | 0.68 | 45.0 | 4.76e-01 | 80.2% | 78.6% |
| 3914404 | 1025.1.1.1 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin_helical | 0.67 | 54.0 | 4.58e-01 | 86.4% | 68.5% |
| 3701110 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.65 | 58.0 | 5.58e-01 | 95.1% | 97.8% |
| 3331778 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.64 | 50.0 | 3.65e-01 | 82.7% | 41.9% |
| 3286949 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.64 | 44.0 | 4.35e-01 | 71.6% | 69.4% |
| 4018548 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.64 | 49.0 | 4.41e-01 | 81.5% | 99.1% |
| 4263412 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.63 | 46.0 | 3.76e-01 | 77.8% | 45.8% |
| 2388480 | 109.4.1.241 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C | 0.63 | 44.0 | 2.83e-01 | 71.6% | 28.8% |
| 4938496 | 103.17.1.0 ↗ | alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain | 0.61 | 40.0 | 4.66e-01 | 82.7% | 100.0% |
| 3688934 | 603.2.1.23 ↗ | alpha bundles › STAT-like › STAT › STAT › DUF7607 | 0.61 | 41.0 | 3.74e-01 | 70.4% | 50.0% |
| 4524350 | 1025.1.1.1 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin_helical | 0.61 | 48.0 | 4.37e-01 | 86.4% | 98.2% |
| 3286494 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 41.0 | 3.91e-01 | 71.6% | 63.0% |
| 3736340 | 622.1.1.7 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 | 0.60 | 42.0 | 3.78e-01 | 72.8% | 82.6% |
| 3594525 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 44.0 | 4.07e-01 | 77.8% | 99.0% |
| 3720226 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.55 | 51.0 | 4.23e-01 | 100.0% | 70.4% |
| 3598538 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.53 | 37.0 | 4.16e-01 | 74.1% | 100.0% |
| 3579373 | 7579.1.1.59 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › LIDHydrolase | 0.51 | 34.0 | 2.37e-01 | 71.6% | 85.4% |