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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00112

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00112

Identity

Kingdom:
phage

Quality

86.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: rep: MG592671.1__AUS02962.1__NVP2275O_381__00381__D191-247
D2 high residues 128-215
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_4176636_prodigal-single.1__X__X__00125__D2-85
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.78 72.0 7.14e-01 100.0% 94.6%
1yd0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.77 60.0 6.01e-01 100.0% 82.0%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 4.21e-01 78.4% 96.7%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 48.0 4.01e-01 98.9% 87.0%
2je6A01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 38.0 2.76e-01 78.4% 51.0%
1qltA03 3.40.462.10 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidases, C-terminal domain 0.51 38.0 2.91e-01 80.7% 71.4%
2xzmE02 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 34.0 3.38e-01 97.7% 65.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963488 821.1.1.7 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › LEM-3_GIY-YIG 0.76 71.0 6.38e-01 100.0% 78.3%
4054044 821.1.1.9 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 0.72 62.0 5.96e-01 100.0% 82.0%
4398485 821.1.1.1 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG 0.71 65.0 4.61e-01 98.9% 35.5%
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.67 40.0 4.79e-01 100.0% 94.5%
4956495 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.58 30.0 3.15e-01 96.6% 53.8%
5080148 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.58 35.0 3.23e-01 97.7% 47.0%
4351609 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.57 49.0 3.92e-01 100.0% 76.3%
4494081 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 49.0 3.86e-01 100.0% 72.5%
4365857 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.56 48.0 3.92e-01 100.0% 80.6%
3709777 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.52 39.0 2.74e-01 83.0% 57.9%
3611020 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 40.0 3.16e-01 87.5% 79.5%
3574622 212.1.1.16 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S5_C 0.51 34.0 3.64e-01 96.6% 80.0%
4658841 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.50 38.0 3.58e-01 79.5% 98.1%
D3 medium residues 63-119
PDB
Domain cluster: rep: NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00113__D12-68
D4 medium residues 277-335
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2optA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.63 53.0 4.07e-01 96.6% 58.3%
1e3pA02 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.61 45.0 4.16e-01 84.7% 89.2%
4yonA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.58 47.0 3.34e-01 100.0% 66.2%
2zfuA01 1.10.10.2150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal RNA-processing protein 8, N-terminal domain 0.57 40.0 4.21e-01 83.1% 86.3%
1vf7A03 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.54 37.0 3.69e-01 71.2% 91.7%
5c8aA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.52 42.0 3.94e-01 96.6% 98.7%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961280 101.1.2.939 ↗ alpha arrays › HTH › HTH › winged helix domain › PF26270 0.59 46.0 4.48e-01 89.8% 78.5%
3774436 109.54.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.55 44.0 3.52e-01 93.2% 74.8%
5055769 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.54 45.0 4.08e-01 93.2% 100.0%