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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00150
Bact-VirNODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00150
Identity
- Kingdom:
- phage
Quality
93.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-52
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hdeC00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.72 | 53.0 | 3.67e-01 | 79.6% | 37.8% |
| 3h27A00 | 3.50.50.100 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › | 0.66 | 50.0 | 2.95e-01 | 83.7% | 75.5% |
| 1cjaA02 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.65 | 46.0 | 3.17e-01 | 75.5% | 24.9% |
| 1q1rA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 48.0 | 3.23e-01 | 81.6% | 91.3% |
| 4azsA03 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.64 | 41.0 | 2.92e-01 | 89.8% | 23.2% |
| 3vkgA03 | 3.20.180.20 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 | 0.62 | 52.0 | 4.18e-01 | 98.0% | 78.0% |
| 4ht4A00 | 3.30.930.30 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › | 0.61 | 54.0 | 3.60e-01 | 100.0% | 92.3% |
| 1l5aA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.61 | 51.0 | 3.38e-01 | 91.8% | 67.0% |
| 3fwyA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 47.0 | 2.98e-01 | 85.7% | 88.4% |
| 1l6rA01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.58 | 43.0 | 3.06e-01 | 81.6% | 24.8% |
| 3mgkB00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.58 | 47.0 | 3.16e-01 | 93.9% | 78.6% |
| 4evxA00 | 1.10.1740.240 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.58 | 48.0 | 3.97e-01 | 100.0% | 56.7% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 49.0 | 3.16e-01 | 100.0% | 41.2% |
| 3ukhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 47.0 | 2.73e-01 | 98.0% | 90.9% |
| 3uqcD02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.55 | 47.0 | 3.35e-01 | 98.0% | 37.3% |
| 5byvB01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 42.0 | 2.89e-01 | 93.9% | 47.6% |
| 4h4rA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 44.0 | 3.00e-01 | 98.0% | 89.7% |
| 3gwaA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 42.0 | 3.05e-01 | 95.9% | 31.1% |
| 1gh9A00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.50 | 40.0 | 3.70e-01 | 98.0% | 66.2% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.50 | 36.0 | 3.73e-01 | 91.8% | 85.1% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4798110 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.79 | 46.0 | 3.22e-01 | 75.5% | 21.0% |
| 2092580 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.78 | 45.0 | 3.38e-01 | 75.5% | 25.2% |
| 4807861 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.78 | 45.0 | 3.72e-01 | 75.5% | 35.4% |
| 3279994 | 7579.1.1.23 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II | 0.73 | 51.0 | 3.06e-01 | 73.5% | 67.9% |
| 4933087 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.67 | 40.0 | 2.87e-01 | 75.5% | 20.0% |
| 4380337 | 102.1.3.25 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › DUF932 | 0.67 | 46.0 | 3.46e-01 | 71.4% | 100.0% |
| 5072854 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.66 | 44.0 | 2.97e-01 | 81.6% | 19.4% |
| 3957844 | 375.1.1.49 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RbpA | 0.64 | 35.0 | 3.20e-01 | 85.7% | 41.5% |
| 3574224 | 2002.1.1.33 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 | 0.60 | 51.0 | 3.05e-01 | 100.0% | 21.3% |
| 3903614 | 375.1.3.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › MRNIP | 0.58 | 51.0 | 4.66e-01 | 100.0% | 75.4% |
| 3179147 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.58 | 50.0 | 4.13e-01 | 100.0% | 55.3% |
| 3591100 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.57 | 48.0 | 2.83e-01 | 91.8% | 36.3% |
| 1566324 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.56 | 44.0 | 3.05e-01 | 89.8% | 78.8% |
| 3289539 | 150.8.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE | 0.56 | 49.0 | 3.27e-01 | 100.0% | 87.3% |
| 4966853 | 375.1.1.324 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1922 | 0.56 | 47.0 | 4.03e-01 | 95.9% | 82.5% |
| 3233572 | 1170.1.2.0 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) | 0.55 | 41.0 | 3.93e-01 | 89.8% | 100.0% |
| 3608664 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 46.0 | 2.91e-01 | 91.8% | 72.3% |
| 3945160 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.55 | 47.0 | 3.53e-01 | 100.0% | 68.5% |
| 4177976 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.55 | 45.0 | 3.32e-01 | 87.8% | 55.7% |
| 3903603 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 48.0 | 4.21e-01 | 100.0% | 93.3% |
| 4177322 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 43.0 | 3.13e-01 | 87.8% | 63.6% |
| 4008902 | 4268.2.1.20 ↗ | alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA › DUF932 | 0.53 | 44.0 | 3.46e-01 | 95.9% | 66.4% |
| 1933320 | 2008.1.1.76 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › SwaI-like | 0.53 | 47.0 | 3.04e-01 | 100.0% | 41.2% |
| 3235875 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.52 | 40.0 | 3.66e-01 | 91.8% | 62.9% |
| 3791852 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.52 | 45.0 | 3.18e-01 | 100.0% | 85.6% |
| 3669518 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.51 | 42.0 | 3.34e-01 | 100.0% | 43.5% |