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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00156

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00156

Identity

Kingdom:
phage

Quality

70.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-56_68-116
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gyvE00 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.59 52.0 3.95e-01 97.8% 81.4%
2looA02 1.10.10.1740 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Transmembrane protein 14-like 0.59 33.0 3.55e-01 95.6% 64.0%
2mgxA00 1.20.940.10 Mainly Alpha › Up-down Bundle › RNA Binding Protein, Prp18; Chain A › Functional domain of the splicing factor Prp18 0.57 50.0 4.47e-01 100.0% 68.7%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 44.0 4.39e-01 95.6% 86.7%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 40.0 4.10e-01 80.2% 89.5%
3mekA04 1.25.40.970 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 37.0 3.95e-01 79.1% 86.3%
1vrmA02 1.10.3980.10 Mainly Alpha › Orthogonal Bundle › T-fold › ApbE-like superfamily 0.52 35.0 3.44e-01 70.3% 100.0%
4rngC00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.51 39.0 4.03e-01 82.4% 94.0%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.50 41.0 3.39e-01 94.5% 74.7%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 44.0 3.84e-01 100.0% 76.6%
1exzB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.50 43.0 3.78e-01 98.9% 62.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3368681 109.4.1.935 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.60 43.0 2.88e-01 74.7% 31.1%
5076373 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.58 51.0 4.90e-01 100.0% 100.0%
3687207 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.56 48.0 4.45e-01 98.9% 85.0%
4988754 3930.1.1.3 alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical 0.56 48.0 4.41e-01 100.0% 100.0%
4977418 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.55 48.0 4.61e-01 100.0% 91.8%
5002845 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.54 36.0 3.35e-01 98.9% 51.7%
3431415 6155.1.1.6 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 0.53 38.0 3.94e-01 76.9% 90.6%
3506419 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 41.0 3.22e-01 85.7% 79.5%
3244940 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.52 38.0 3.87e-01 76.9% 85.6%
4002622 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.52 38.0 3.68e-01 79.1% 77.1%
5024741 5051.1.1.9 alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Transp_cyt_pur 0.51 45.0 2.90e-01 98.9% 65.9%
1870497 3271.1.1.1 alpha arrays › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › CdiA C-terminal nuclease domain › Ntox28 0.51 38.0 3.74e-01 80.2% 95.0%
3615596 3758.1.1.0 alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins 0.51 44.0 3.21e-01 96.7% 95.4%
5039676 4095.1.1.1 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.51 38.0 2.86e-01 79.1% 87.8%
4500492 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.50 41.0 2.67e-01 92.3% 88.6%
D2 high residues 199-251_393-478
PDB
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u9jA00 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.60 43.0 4.14e-01 73.4% 73.9%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.59 43.0 4.50e-01 75.5% 90.0%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 32.0 3.80e-01 100.0% 86.0%
3n98A02 1.20.1430.10 Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain 0.51 39.0 4.03e-01 80.6% 98.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626734 3890.1.1.1 alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Bax1-I 0.59 36.0 3.14e-01 99.3% 39.0%
3878141 601.1.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.59 42.0 4.44e-01 73.4% 87.2%
5030543 159.1.3.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 0.55 30.0 3.47e-01 97.1% 72.0%
3730903 601.18.1.0 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 0.55 40.0 3.94e-01 75.5% 75.3%
D3 high residues 256-300_315-389
PDB
Domain cluster: representative
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lfpA03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.64 31.0 3.81e-01 82.5% 72.6%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 30.0 3.54e-01 97.5% 65.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 31.0 3.42e-01 98.3% 58.1%
1mw7A03 3.30.70.980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain 0.60 31.0 3.73e-01 81.7% 76.0%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 47.0 3.51e-01 84.2% 84.1%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 37.0 4.12e-01 99.2% 79.8%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 30.0 3.20e-01 95.8% 53.4%
2dchX01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.58 32.0 3.60e-01 90.0% 68.8%
3ofgB00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 33.0 3.82e-01 80.0% 77.0%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 26.0 3.19e-01 70.8% 64.9%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 36.0 3.56e-01 99.2% 58.1%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 33.0 4.07e-01 88.3% 92.0%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.56 28.0 3.43e-01 81.7% 74.6%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 31.0 3.59e-01 90.8% 74.1%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 31.0 3.54e-01 84.2% 74.7%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.55 28.0 3.42e-01 80.8% 77.8%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 29.0 3.37e-01 91.7% 69.0%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 30.0 3.63e-01 98.3% 82.9%
3hvaA00 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 37.0 3.37e-01 85.0% 51.2%
2a5yC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 29.0 3.03e-01 90.8% 52.3%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.54e-01 88.3% 77.0%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.48e-01 94.2% 74.7%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 31.0 3.57e-01 93.3% 79.8%
1d5aA03 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.53 42.0 3.74e-01 82.5% 70.1%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 34.0 3.61e-01 94.2% 74.8%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.52 29.0 3.38e-01 88.3% 77.8%
2wa0A01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.52 32.0 3.46e-01 70.8% 73.3%
3cuqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 27.0 3.19e-01 81.7% 73.8%
7sk7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.51 42.0 3.32e-01 88.3% 90.9%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 32.0 3.34e-01 92.5% 66.7%
3uh9B00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 27.0 2.64e-01 96.7% 43.6%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.71e-01 81.7% 74.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501408 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 35.0 4.29e-01 89.2% 71.2%
3561915 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.67 28.0 3.44e-01 73.3% 58.7%
4937548 304.54.1.0 a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.66 28.0 3.89e-01 78.3% 83.6%
3840730 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.62 28.0 3.29e-01 75.0% 58.7%
3716821 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 27.0 3.34e-01 73.3% 62.7%
4033553 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.61 31.0 3.35e-01 78.3% 54.3%
3890741 320.1.1.7 a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N 0.60 28.0 3.27e-01 91.7% 60.0%
4600303 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.59 31.0 3.86e-01 82.5% 82.7%
5023543 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.57 33.0 3.56e-01 92.5% 66.0%
3220687 3012.1.1.5 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › T6PP_C 0.57 29.0 3.27e-01 80.0% 62.1%
3529975 327.11.2.18 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DTX3L_KH-like 0.57 29.0 3.67e-01 96.7% 86.2%
2075041 3012.1.1.3 a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › S6PP 0.56 28.0 3.43e-01 81.7% 74.6%
3939951 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 27.0 3.23e-01 88.3% 66.3%
3718665 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 33.0 3.86e-01 93.3% 83.5%
4938255 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 29.0 3.37e-01 88.3% 72.5%
4255377 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.54 28.0 3.44e-01 80.8% 80.0%
4939871 101.1.2.896 alpha arrays › HTH › HTH › winged helix domain › DUF2551 0.53 30.0 3.23e-01 90.8% 61.9%
3687319 101.1.2.520 alpha arrays › HTH › HTH › winged helix domain › DUF7779 0.53 31.0 3.59e-01 90.0% 81.2%
4941846 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 31.0 3.87e-01 70.0% 96.0%
5066119 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 46.0 3.48e-01 100.0% 85.2%
3901998 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 42.0 3.15e-01 87.5% 81.3%
5025623 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 32.0 3.84e-01 72.5% 92.5%
5040640 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 32.0 3.79e-01 74.2% 91.3%
4932057 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 31.0 3.75e-01 71.7% 91.3%
1159602 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.51 32.0 3.33e-01 92.5% 66.1%
3625878 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.51 28.0 2.99e-01 88.3% 60.0%
3216059 5001.1.1.66 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.51 41.0 3.06e-01 86.7% 82.3%
3997467 4300.1.1.0 beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like 0.50 37.0 3.22e-01 82.5% 50.3%
3638163 101.1.2.154 alpha arrays › HTH › HTH › winged helix domain › CDT1_C 0.50 28.0 2.97e-01 77.5% 58.9%