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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00266

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00266

Identity

Kingdom:
phage

Quality

65.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-62
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7q04F01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.74 51.0 4.14e-01 74.5% 94.5%
3gceA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.71 52.0 4.22e-01 78.2% 84.6%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.71 49.0 4.87e-01 76.4% 69.0%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.71 59.0 4.85e-01 94.5% 64.4%
2azpA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 53.0 3.87e-01 85.5% 39.8%
2pbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 55.0 3.71e-01 89.1% 67.0%
1z01A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 51.0 4.92e-01 81.8% 93.4%
1v5vA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.67 50.0 3.60e-01 81.8% 37.2%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.67 47.0 3.24e-01 74.5% 25.4%
7ylsB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 48.0 3.93e-01 80.0% 94.4%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 47.0 3.67e-01 80.0% 69.2%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 50.0 2.91e-01 87.3% 8.8%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 48.0 3.64e-01 80.0% 66.7%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.65 47.0 3.89e-01 80.0% 87.9%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.64 48.0 3.84e-01 83.6% 92.4%
3k2tA01 3.30.505.50 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain 0.64 46.0 4.86e-01 76.4% 100.0%
3ejxA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.63 48.0 3.60e-01 85.5% 44.2%
2b1xA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 46.0 3.64e-01 81.8% 79.4%
6l4lA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 46.0 3.75e-01 83.6% 48.3%
1pj5A03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 45.0 3.14e-01 81.8% 26.3%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.42e-01 87.3% 57.4%
6z46V01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 46.0 3.33e-01 87.3% 50.0%
7lxuE01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 48.0 3.34e-01 94.5% 54.2%
3a0oA03 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 49.0 3.21e-01 98.2% 69.0%
8f66A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 47.0 3.29e-01 94.5% 55.2%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 47.0 3.17e-01 94.5% 49.0%
4k22A02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.58 47.0 3.90e-01 94.5% 99.1%
1v6zA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.58 43.0 4.21e-01 85.5% 93.8%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.58 45.0 3.72e-01 85.5% 46.7%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 3.99e-01 78.2% 75.8%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 46.0 3.02e-01 90.9% 45.4%
2lojA01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 39.0 4.25e-01 85.5% 100.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 47.0 2.84e-01 96.4% 49.3%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 40.0 3.79e-01 76.4% 71.6%
2cw5A02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.56 37.0 3.22e-01 83.6% 41.6%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.67e-01 90.9% 58.5%
1g0uE00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 43.0 2.99e-01 92.7% 48.7%
2k6hA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 46.0 3.41e-01 100.0% 86.4%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 39.0 3.41e-01 76.4% 95.3%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.84e-01 81.8% 78.8%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 39.0 3.60e-01 78.2% 64.9%
3r4rA02 2.60.40.2590 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 40.0 3.14e-01 83.6% 96.0%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.53 39.0 3.79e-01 83.6% 93.9%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.53 43.0 3.55e-01 96.4% 46.5%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 39.0 3.82e-01 80.0% 80.3%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 39.0 3.70e-01 83.6% 85.3%
5kiqA02 3.10.20.890 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 37.0 3.51e-01 80.0% 79.2%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 3.99e-01 89.1% 74.6%
2q07A03 2.30.130.10 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain 0.52 39.0 3.80e-01 87.3% 100.0%
2k0mA00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.16e-01 80.0% 65.4%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2834506 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.73 49.0 4.43e-01 70.9% 58.4%
2856288 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.72 49.0 5.34e-01 70.9% 97.6%
1007 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.70 48.0 5.29e-01 72.7% 95.1%
3968312 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.70 53.0 4.31e-01 83.6% 97.2%
2858693 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.70 46.0 4.86e-01 70.9% 77.6%
5010420 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.70 55.0 4.45e-01 87.3% 78.7%
4487967 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.70 50.0 4.21e-01 78.2% 86.0%
1150523 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.70 48.0 4.27e-01 72.7% 55.6%
4932660 2003.1.5.4 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PCMT 0.70 55.0 3.77e-01 89.1% 65.4%
3326752 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.69 61.0 3.92e-01 100.0% 40.4%
3781932 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 54.0 3.28e-01 89.1% 26.2%
1171969 66.1.1.2 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske_2 0.68 46.0 4.94e-01 70.9% 90.9%
3620749 7528.1.1.2 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.68 52.0 4.01e-01 83.6% 81.6%
3695189 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.68 53.0 3.45e-01 87.3% 42.3%
3056326 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.68 46.0 4.10e-01 70.9% 54.3%
4160795 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.68 52.0 3.96e-01 89.1% 45.5%
3930915 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.67 53.0 3.81e-01 89.1% 56.4%
3684518 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.67 48.0 3.77e-01 76.4% 59.1%
4029045 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.67 59.0 3.76e-01 100.0% 53.9%
4417898 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.67 52.0 3.87e-01 89.1% 43.5%
3519649 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.67 59.0 3.82e-01 100.0% 46.4%
3596855 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.67 51.0 3.82e-01 85.5% 87.6%
3271417 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.66 59.0 3.84e-01 100.0% 44.8%
3937472 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 55.0 4.54e-01 96.4% 78.1%
3590871 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.66 45.0 2.95e-01 72.7% 15.8%
3623960 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.66 54.0 3.88e-01 94.5% 68.2%
5083148 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 49.0 4.07e-01 81.8% 96.0%
4445680 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.65 48.0 3.66e-01 80.0% 66.7%
4930189 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.65 50.0 4.98e-01 89.1% 95.0%
3716797 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.65 57.0 3.69e-01 100.0% 37.8%
4033181 7528.1.1.2 a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_II 0.65 49.0 3.92e-01 83.6% 86.1%
3405160 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.64 52.0 3.79e-01 92.7% 53.3%
2719643 66.1.1.0 beta sandwiches › ISP domain › ISP domain › ISP domain 0.64 44.0 3.93e-01 72.7% 54.9%
4369844 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.64 54.0 3.94e-01 96.4% 43.4%
1273610 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.64 53.0 4.06e-01 100.0% 46.9%
3788543 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.64 56.0 3.53e-01 100.0% 36.2%
3928377 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.63 54.0 3.80e-01 100.0% 46.6%
3735195 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.63 52.0 3.99e-01 94.5% 80.0%
4630692 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.62 51.0 3.81e-01 98.2% 43.1%
3958547 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.61 49.0 4.70e-01 92.7% 93.8%
4048173 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.60 49.0 3.95e-01 96.4% 55.8%
4032931 286.1.1.5 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N 0.59 47.0 3.77e-01 94.5% 52.0%
184803 6029.1.1.1 beta meanders › Hemin uptake protein hemP › Hemin uptake protein hemP › Hemin uptake protein hemP › hemP 0.58 40.0 3.91e-01 85.5% 63.5%
3970300 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.58 49.0 3.09e-01 96.4% 43.9%
3692244 5.1.4.436 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, PQQ_2, Beta-prop_EMC1_N 0.57 44.0 2.42e-01 83.6% 6.9%
4991900 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 40.0 2.46e-01 76.4% 36.4%
2068824 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.56 47.0 3.01e-01 96.4% 43.2%
3764537 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 42.0 3.70e-01 80.0% 61.3%
3556735 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.56 42.0 3.85e-01 81.8% 65.8%
3743269 5.1.4.561 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CRT10 0.56 42.0 2.57e-01 83.6% 22.9%
5019949 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.56 44.0 3.78e-01 90.9% 88.4%
1889033 2004.1.1.203 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.56 44.0 2.91e-01 87.3% 42.4%
4312419 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.55 44.0 3.00e-01 92.7% 57.4%
4462308 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.55 46.0 2.94e-01 96.4% 45.1%
3491787 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 39.0 2.65e-01 76.4% 22.4%
3399989 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.55 41.0 3.17e-01 85.5% 69.3%
3970659 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 42.0 4.10e-01 85.5% 100.0%
3608770 4.1.1.38 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.53 42.0 3.23e-01 96.4% 98.7%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.53 42.0 3.92e-01 87.3% 71.4%
3716115 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 44.0 2.79e-01 96.4% 63.8%
3588147 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.51 41.0 2.50e-01 94.5% 26.8%
3989485 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.51 38.0 3.98e-01 92.7% 90.0%
4204975 12.3.1.14 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III 0.51 40.0 2.56e-01 98.2% 78.0%
D2 medium residues 295-370
PDB