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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00268
Bact-VirNODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00268
Identity
- Kingdom:
- phage
Quality
74.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-92
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ym5A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.76 | 55.0 | 4.29e-01 | 78.4% | 36.1% |
| 3d9wA02 | 2.40.128.150 | Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases | 0.68 | 41.0 | 3.68e-01 | 83.8% | 43.1% |
| 6n9aB02 | 3.30.420.200 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.67 | 41.0 | 4.24e-01 | 79.7% | 65.2% |
| 1qy9A02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.67 | 49.0 | 3.86e-01 | 79.7% | 36.8% |
| 4dloB01 | 4.10.1240.10 | Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain | 0.66 | 42.0 | 4.40e-01 | 79.7% | 72.7% |
| 3lifB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.65 | 48.0 | 3.80e-01 | 78.4% | 39.6% |
| 3ub8A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 52.0 | 4.12e-01 | 89.2% | 63.1% |
| 1xubA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.64 | 47.0 | 3.76e-01 | 78.4% | 39.2% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.63 | 53.0 | 4.34e-01 | 93.2% | 69.6% |
| 5ay6A01 | 2.60.98.20 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Flagellar hook protein FlgE | 0.63 | 50.0 | 3.86e-01 | 87.8% | 80.1% |
| 6hmjA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.62 | 49.0 | 4.36e-01 | 85.1% | 79.0% |
| 3rd6A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 44.0 | 3.54e-01 | 74.3% | 69.4% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.61 | 43.0 | 3.51e-01 | 73.0% | 62.6% |
| 3n8bA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 45.0 | 4.48e-01 | 85.1% | 76.0% |
| 4ehoA04 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 46.0 | 3.93e-01 | 83.8% | 66.1% |
| 2v8qA01 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.59 | 42.0 | 3.97e-01 | 74.3% | 79.8% |
| 2veaA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 43.0 | 3.58e-01 | 77.0% | 66.9% |
| 1s67L00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 44.0 | 3.82e-01 | 83.8% | 68.1% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.57 | 39.0 | 3.41e-01 | 70.3% | 63.7% |
| 2xrnA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 43.0 | 3.32e-01 | 82.4% | 50.3% |
| 5c7qB00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.57 | 39.0 | 3.04e-01 | 73.0% | 51.7% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.57 | 44.0 | 3.70e-01 | 87.8% | 47.9% |
| 1uurA04 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 40.0 | 3.37e-01 | 85.1% | 42.1% |
| 4kghA00 | 3.15.10.10 | Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 | 0.56 | 45.0 | 3.26e-01 | 85.1% | 68.9% |
| 1n26A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 38.0 | 3.43e-01 | 70.3% | 56.1% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 43.0 | 3.78e-01 | 83.8% | 66.1% |
| 2basA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.69e-01 | 82.4% | 79.3% |
| 2r78C00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.57e-01 | 78.4% | 62.9% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 44.0 | 2.94e-01 | 89.2% | 95.4% |
| 5iu1B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 41.0 | 3.61e-01 | 79.7% | 55.4% |
| 1d06A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 41.0 | 3.46e-01 | 79.7% | 63.8% |
| 4fpwB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.55 | 41.0 | 3.20e-01 | 79.7% | 80.7% |
| 1vhzA01 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 38.0 | 2.98e-01 | 74.3% | 49.4% |
| 5cflA02 | 3.40.50.12100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein | 0.55 | 45.0 | 3.68e-01 | 94.6% | 59.2% |
| 4hj1A01 | 2.60.98.50 | Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › | 0.54 | 42.0 | 3.26e-01 | 83.8% | 50.0% |
| 3k7cA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 3.29e-01 | 71.6% | 94.4% |
| 3djwA00 | 3.30.160.300 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 39.0 | 3.65e-01 | 79.7% | 81.1% |
| 5os9A00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.53 | 41.0 | 3.59e-01 | 85.1% | 67.0% |
| 3mfxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 40.0 | 3.54e-01 | 83.8% | 66.7% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 40.0 | 3.47e-01 | 85.1% | 65.6% |
| 5t1dB00 | 3.10.390.20 | Alpha Beta › Roll › SAND domain › Viral glycoprotein L | 0.52 | 33.0 | 3.04e-01 | 79.7% | 48.5% |
| 3bwlB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 39.0 | 3.36e-01 | 79.7% | 61.8% |
| 3oloA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 38.0 | 3.41e-01 | 79.7% | 64.9% |
| 4ffgA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 38.0 | 2.57e-01 | 79.7% | 44.8% |
| 2x45A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 36.0 | 2.97e-01 | 73.0% | 38.2% |
| 7c5wA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 36.0 | 2.91e-01 | 73.0% | 96.6% |
| 5evhA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 38.0 | 3.32e-01 | 82.4% | 81.0% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 37.0 | 3.27e-01 | 79.7% | 51.8% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.50 | 39.0 | 3.25e-01 | 85.1% | 89.1% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3739561 | 286.1.1.2 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF | 0.72 | 59.0 | 4.52e-01 | 94.6% | 39.6% |
| 3226466 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.70 | 50.0 | 4.13e-01 | 82.4% | 42.3% |
| 4341158 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.69 | 47.0 | 3.66e-01 | 71.6% | 63.2% |
| 3991046 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.68 | 52.0 | 4.57e-01 | 82.4% | 59.1% |
| 3658323 | 284.1.2.1 ↗ | a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases › OSR1_C | 0.66 | 45.0 | 4.05e-01 | 79.7% | 50.5% |
| 3785200 | 4.1.1.312 ↗ | beta barrels › SH3 › SH3 › SH3 › Med13_N | 0.65 | 46.0 | 3.31e-01 | 73.0% | 79.0% |
| 5036898 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.64 | 47.0 | 3.71e-01 | 77.0% | 59.0% |
| 3641525 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.64 | 54.0 | 4.00e-01 | 93.2% | 70.2% |
| 3551723 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.64 | 53.0 | 4.18e-01 | 93.2% | 60.6% |
| 3531090 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.63 | 55.0 | 4.20e-01 | 97.3% | 64.6% |
| 3173242 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.63 | 45.0 | 3.85e-01 | 75.7% | 74.2% |
| 5022744 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.63 | 44.0 | 3.64e-01 | 74.3% | 53.3% |
| 3661948 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.62 | 39.0 | 3.98e-01 | 78.4% | 64.0% |
| 4081645 | 60.1.1.3 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Sld7_N | 0.61 | 46.0 | 3.68e-01 | 83.8% | 80.0% |
| 3472961 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 51.0 | 4.11e-01 | 94.6% | 61.3% |
| 3913070 | 331.4.1.3 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor | 0.60 | 41.0 | 3.88e-01 | 70.3% | 77.3% |
| 3206409 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 44.0 | 3.56e-01 | 81.1% | 41.2% |
| 3584039 | 5.1.5.89 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 | 0.60 | 50.0 | 3.18e-01 | 94.6% | 94.9% |
| 3439646 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.60 | 47.0 | 4.19e-01 | 85.1% | 65.7% |
| 3231323 | 60.1.1.0 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain | 0.59 | 45.0 | 3.79e-01 | 83.8% | 91.9% |
| 3663084 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.59 | 42.0 | 3.39e-01 | 75.7% | 69.7% |
| 3492348 | 2.1.1.25 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 | 0.59 | 43.0 | 3.46e-01 | 78.4% | 46.2% |
| 5062858 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.58 | 45.0 | 3.91e-01 | 83.8% | 53.9% |
| 3295575 | 284.1.3.2 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › OSR1_C | 0.58 | 38.0 | 3.46e-01 | 77.0% | 50.0% |
| 3393168 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.58 | 44.0 | 3.90e-01 | 82.4% | 86.4% |
| 3215014 | 632.22.1.184 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SMC_N | 0.57 | 43.0 | 2.62e-01 | 81.1% | 24.6% |
| 4374392 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.57 | 44.0 | 2.80e-01 | 85.1% | 19.6% |
| 3239667 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.57 | 43.0 | 2.52e-01 | 82.4% | 17.8% |
| 3508573 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 41.0 | 3.65e-01 | 75.7% | 65.7% |
| 3723734 | 223.1.1.12 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_2 | 0.56 | 48.0 | 3.81e-01 | 97.3% | 61.3% |
| 3203624 | 59.1.1.9 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › EAF | 0.56 | 43.0 | 3.67e-01 | 86.5% | 70.8% |
| 3862290 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 39.0 | 3.15e-01 | 74.3% | 90.3% |
| 4015499 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.55 | 43.0 | 3.17e-01 | 89.2% | 87.1% |
| 4205711 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.55 | 45.0 | 3.65e-01 | 94.6% | 66.5% |
| 328257 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 41.0 | 3.66e-01 | 78.4% | 71.2% |
| 3953750 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.55 | 41.0 | 2.61e-01 | 79.7% | 53.8% |
| 3967946 | 223.1.1.97 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 | 0.54 | 46.0 | 3.65e-01 | 98.6% | 63.6% |
| 3317450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 41.0 | 3.63e-01 | 81.1% | 83.6% |
| 3714670 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 45.0 | 4.07e-01 | 93.2% | 68.6% |
| 3290055 | 223.1.1.36 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD | 0.54 | 42.0 | 3.28e-01 | 85.1% | 75.9% |
| 3596677 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 39.0 | 3.64e-01 | 78.4% | 67.4% |
| 3487063 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.53 | 38.0 | 3.51e-01 | 75.7% | 77.3% |
| 3638304 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.53 | 39.0 | 3.38e-01 | 79.7% | 60.0% |
| 3474148 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 3.46e-01 | 82.4% | 86.7% |
| 78 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.53 | 40.0 | 3.47e-01 | 85.1% | 65.6% |
| 4964699 | 220.1.1.219 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch | 0.52 | 38.0 | 3.49e-01 | 78.4% | 85.0% |
| 4946589 | 300.1.1.0 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease | 0.51 | 36.0 | 2.72e-01 | 73.0% | 71.7% |
| 3882652 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 38.0 | 3.18e-01 | 79.7% | 84.6% |
| 3266685 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.51 | 39.0 | 2.17e-01 | 82.4% | 7.5% |
| 4653150 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 40.0 | 3.59e-01 | 86.5% | 77.3% |
| 1271814 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 41.0 | 3.49e-01 | 95.9% | 83.2% |
| 2095479 | 1170.1.2.3 ↗ | beta barrels › IL8-related › IL8-related › chemokine-related domain in glycoprotein L (gL) › Phage_glycop_gL | 0.50 | 38.0 | 3.32e-01 | 79.7% | 54.6% |
D2
medium
residues 251-345
Domain cluster:
representative
D3
medium
residues 440-498