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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00269

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00269

Identity

Kingdom:
phage

Quality

66.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 170-234
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.75 56.0 4.22e-01 80.0% 46.5%
3riqA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.73 47.0 2.73e-01 83.1% 7.9%
1s7jA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.70 53.0 4.24e-01 81.5% 48.5%
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 50.0 3.57e-01 87.7% 25.6%
5jicA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.67 47.0 3.40e-01 73.8% 31.9%
4l69A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.66 52.0 5.13e-01 86.2% 97.1%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.66 49.0 5.23e-01 90.8% 94.6%
1wsrA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.65 44.0 4.00e-01 70.8% 65.9%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 48.0 3.85e-01 80.0% 48.5%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.64 46.0 4.23e-01 75.4% 69.8%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 46.0 3.87e-01 76.9% 87.4%
3kw2A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 52.0 5.14e-01 92.3% 98.5%
5n6lA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.63 51.0 3.41e-01 90.8% 23.0%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.62 51.0 4.95e-01 92.3% 98.6%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.62 43.0 3.81e-01 73.8% 49.0%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.62 45.0 4.12e-01 76.9% 100.0%
5wt7A00 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.61 46.0 3.66e-01 83.1% 73.6%
3q0xA01 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.61 50.0 3.70e-01 87.7% 81.3%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.36e-01 96.9% 36.6%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.60 53.0 3.40e-01 100.0% 93.7%
4h5iB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 3.04e-01 87.7% 35.9%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.60 44.0 3.38e-01 81.5% 32.9%
2f51A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 49.0 4.12e-01 90.8% 86.5%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.59 45.0 3.37e-01 86.2% 36.1%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 42.0 3.58e-01 81.5% 45.8%
7asgA01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.56 42.0 3.44e-01 83.1% 76.7%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 40.0 4.40e-01 90.8% 92.3%
1xksA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 47.0 2.95e-01 95.4% 25.1%
3ktzA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 48.0 3.60e-01 100.0% 86.3%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.55 41.0 3.45e-01 81.5% 47.2%
1iftA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 44.0 3.39e-01 95.4% 87.4%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 47.0 3.07e-01 100.0% 40.8%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.54 44.0 3.25e-01 98.5% 98.6%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 33.0 2.85e-01 84.6% 37.7%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.79e-01 92.3% 35.3%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.53 41.0 3.23e-01 87.7% 53.2%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 44.0 3.37e-01 92.3% 86.4%
3ctkA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.52 42.0 3.26e-01 96.9% 46.7%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 42.0 2.89e-01 98.5% 27.0%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 45.0 2.94e-01 98.5% 38.3%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.51 41.0 2.69e-01 90.8% 92.0%
2g8sB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 41.0 2.67e-01 92.3% 35.2%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 43.0 3.29e-01 93.8% 84.4%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.77e-01 98.5% 21.3%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 38.0 2.70e-01 89.2% 92.4%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4955882 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.79 58.0 4.52e-01 83.1% 38.5%
3518153 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.72 48.0 4.10e-01 83.1% 41.8%
3386570 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.71 55.0 4.32e-01 83.1% 47.8%
3601677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 45.0 2.90e-01 90.8% 15.3%
4602979 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.71 55.0 4.18e-01 84.6% 41.1%
3512462 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.71 48.0 3.94e-01 83.1% 38.3%
4492832 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.69 56.0 4.24e-01 89.2% 44.5%
4645759 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.69 55.0 3.96e-01 89.2% 39.0%
3405373 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.69 45.0 2.78e-01 83.1% 11.6%
3929699 5.1.4.244 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.67 49.0 3.16e-01 76.9% 18.9%
3502259 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.66 48.0 3.94e-01 96.9% 40.8%
3970157 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.66 55.0 4.34e-01 93.8% 50.4%
3397985 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 49.0 3.95e-01 96.9% 40.8%
None 0.65 54.0 3.40e-01 89.2% 29.5%
4387163 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.65 49.0 4.98e-01 83.1% 98.5%
3801304 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.65 50.0 4.00e-01 100.0% 40.0%
3509350 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.65 48.0 3.84e-01 96.9% 38.8%
4968911 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.65 51.0 4.29e-01 87.7% 65.2%
3786024 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 48.0 3.03e-01 81.5% 15.4%
3882656 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 57.0 3.52e-01 98.5% 26.2%
3394097 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.64 51.0 4.38e-01 86.2% 77.0%
3483766 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.63 49.0 4.36e-01 100.0% 57.0%
3508120 214.1.1.10 a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.63 46.0 3.88e-01 96.9% 45.2%
3417872 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 45.0 3.88e-01 76.9% 66.7%
3280061 2008.1.1.20 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Uma2 0.62 53.0 3.93e-01 96.9% 46.2%
4018116 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 44.0 3.73e-01 78.5% 46.6%
3716172 7575.1.1.4 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.62 49.0 3.22e-01 89.2% 49.3%
3438472 219.1.1.23 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › MINDY_DUB 0.62 48.0 3.24e-01 83.1% 30.7%
3596952 7575.1.1.0 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.61 49.0 3.17e-01 89.2% 54.6%
3608210 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 45.0 2.79e-01 92.3% 12.5%
3989371 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.60 46.0 4.67e-01 86.2% 98.5%
3167247 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.76e-01 81.5% 13.6%
None 0.59 49.0 3.11e-01 90.8% 24.2%
4024830 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.49e-01 98.5% 55.2%
3596173 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 46.0 2.85e-01 92.3% 13.3%
3576812 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 50.0 4.47e-01 98.5% 66.3%
4286423 2003.1.7.10 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Rib_5-P_isom_A 0.59 41.0 3.05e-01 93.8% 27.4%
3738403 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.59 52.0 3.09e-01 100.0% 22.5%
3481354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 49.0 3.13e-01 92.3% 35.2%
4340002 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.58 44.0 4.35e-01 86.2% 97.1%
3399741 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.58 48.0 3.06e-01 92.3% 35.0%
None 0.57 50.0 3.08e-01 96.9% 32.8%
4975855 2003.6.1.1 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB 0.57 47.0 3.10e-01 98.5% 19.7%
3857554 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 50.0 3.09e-01 98.5% 36.2%
3927181 5.1.4.377 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.56 49.0 3.04e-01 96.9% 30.1%
4275604 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.56 43.0 4.43e-01 87.7% 91.7%
3707477 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 45.0 2.74e-01 86.2% 25.7%
3692744 5.1.4.418 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lactonase 0.56 46.0 2.99e-01 92.3% 26.9%
3912572 5.1.5.5 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N,DPPIV_rep 0.56 48.0 2.85e-01 95.4% 34.2%
3104388 5.1.5.92 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EML 0.55 48.0 3.00e-01 96.9% 33.5%
3455892 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.55 47.0 3.32e-01 96.9% 32.9%
3723643 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 45.0 3.19e-01 98.5% 86.4%
3811997 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.55 49.0 3.69e-01 100.0% 94.2%
3201324 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.55 45.0 3.16e-01 100.0% 81.8%
2229 5.1.4.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Me-amine-dh_H 0.54 45.0 2.79e-01 92.3% 35.3%
3915500 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.54 44.0 3.22e-01 92.3% 34.1%
3994860 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 48.0 2.92e-01 96.9% 22.4%
4935597 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 43.0 2.69e-01 93.8% 66.1%
3945426 5.1.3.22 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.51 41.0 2.66e-01 92.3% 34.0%
5042381 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.51 43.0 2.75e-01 100.0% 26.2%
D2 medium residues 84-104_116-159
PDB