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NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00296

Bact-Vir

NODE_14_length_293356_cov_397-335986_prodigal-single.1__X__X__00296

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-77_99-142_195-211
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odhA01 3.40.210.20 Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain 0.65 44.0 4.64e-01 92.8% 76.4%
1dmuA00 3.40.600.20 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI 0.62 55.0 4.35e-01 100.0% 76.6%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 38.0 3.51e-01 94.2% 50.6%
3hi7B02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 4.25e-01 98.6% 83.6%
3kkfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 32.0 3.64e-01 78.3% 76.2%
3s1sA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.51 45.0 4.23e-01 97.1% 81.1%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3822590 2008.1.1.77 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NOV_C 0.66 52.0 5.68e-01 86.2% 99.1%
5029815 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.60 49.0 4.22e-01 87.7% 74.4%
4094271 2008.1.1.192 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_Bsp6I 0.58 53.0 4.98e-01 99.3% 82.9%
4957302 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 35.0 4.15e-01 74.6% 100.0%
3284582 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.54 46.0 4.52e-01 92.8% 88.0%
4200537 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 43.0 2.90e-01 87.0% 43.6%
3182274 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 47.0 3.99e-01 99.3% 100.0%
5000381 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.51 40.0 4.19e-01 92.8% 91.2%
185517 2008.1.1.64 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › BpuSI_N 0.51 45.0 4.23e-01 97.1% 81.5%
3645639 4018.1.1.1 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › FBPase 0.51 38.0 3.42e-01 97.1% 55.4%
D2 medium residues 78-98_143-194
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.66 58.0 4.80e-01 98.6% 69.7%
3mfdA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 56.0 4.00e-01 98.6% 93.2%
3pr6A00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.64 56.0 4.52e-01 98.6% 58.6%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.64 53.0 5.46e-01 98.6% 100.0%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 55.0 4.78e-01 100.0% 71.1%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.63 43.0 3.24e-01 71.2% 65.5%
6h5bB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.62 53.0 4.63e-01 100.0% 67.2%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 54.0 4.78e-01 100.0% 71.6%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.61 52.0 5.08e-01 100.0% 86.7%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 53.0 4.59e-01 100.0% 68.9%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 53.0 4.57e-01 100.0% 70.6%
2wadA04 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.60 52.0 3.41e-01 100.0% 86.7%
7ct3A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 51.0 4.45e-01 97.3% 74.4%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 52.0 4.45e-01 98.6% 60.8%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.60 52.0 4.34e-01 100.0% 64.7%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.60 52.0 4.16e-01 98.6% 50.7%
3tw8A01 3.30.450.200 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module 0.60 51.0 4.23e-01 98.6% 62.3%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 51.0 4.24e-01 98.6% 59.0%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 50.0 4.72e-01 100.0% 97.9%
3nhqA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 50.0 4.33e-01 97.3% 73.9%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 49.0 4.03e-01 100.0% 49.7%
5x6vF00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 48.0 4.25e-01 100.0% 65.3%
1vlrA01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.57 32.0 2.91e-01 93.2% 39.8%
3o6qA02 3.30.70.2720 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.06e-01 100.0% 58.8%
4csbA00 2.40.128.480 Mainly Beta › Beta Barrel › Lipocalin › Rhodococcus equi virulence-associated protein 0.57 37.0 3.21e-01 100.0% 43.4%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 42.0 3.51e-01 100.0% 43.6%
3fg8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 47.0 4.27e-01 100.0% 88.7%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 48.0 4.12e-01 100.0% 64.7%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 3.05e-01 100.0% 99.7%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 44.0 3.92e-01 97.3% 77.8%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 33.0 3.36e-01 100.0% 67.1%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 35.0 2.67e-01 74.0% 68.4%
2kilA00 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.51 34.0 2.69e-01 71.2% 49.7%
2k54A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.07e-01 75.3% 87.0%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4977323 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 63.0 5.23e-01 100.0% 67.2%
3202709 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 57.0 4.50e-01 100.0% 62.5%
4944328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 58.0 4.80e-01 100.0% 61.5%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 57.0 5.04e-01 100.0% 78.7%
5007519 223.2.1.64 a+b three layers › Profilin-like › profilin-like › profilin-like › PF27410 0.64 56.0 4.94e-01 98.6% 70.0%
5051049 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 56.0 4.69e-01 97.3% 67.2%
3507450 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.64 57.0 4.81e-01 100.0% 65.6%
4979842 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 57.0 4.79e-01 100.0% 60.0%
5050210 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.64 56.0 4.77e-01 100.0% 67.5%
5000843 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 56.0 4.84e-01 100.0% 71.3%
5050426 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.63 56.0 4.76e-01 98.6% 68.6%
3698579 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 56.0 4.90e-01 100.0% 79.1%
4018116 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 55.0 4.71e-01 98.6% 67.8%
4028315 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 55.0 4.83e-01 100.0% 78.2%
5072860 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 4.59e-01 100.0% 60.9%
5065367 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.46e-01 98.6% 62.2%
4964955 223.2.1.63 a+b three layers › Profilin-like › profilin-like › profilin-like › DUF7522 0.62 54.0 4.50e-01 98.6% 65.9%
5051614 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 4.53e-01 98.6% 61.6%
5072466 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.62e-01 98.6% 60.8%
5053281 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 4.50e-01 97.3% 64.0%
4970750 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 54.0 4.65e-01 100.0% 69.7%
5077119 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 53.0 4.26e-01 98.6% 52.0%
3701193 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.62 52.0 4.32e-01 100.0% 57.6%
5076776 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 5.06e-01 100.0% 97.6%
5077835 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 53.0 4.47e-01 98.6% 61.6%
2817021 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 53.0 4.50e-01 100.0% 67.2%
4928516 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 53.0 4.61e-01 100.0% 70.3%
4984108 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.61 54.0 4.60e-01 100.0% 66.7%
4998686 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.19e-01 98.6% 61.3%
5073955 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 4.31e-01 100.0% 56.7%
5079486 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.34e-01 100.0% 55.0%
5053041 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.36e-01 100.0% 60.0%
5071984 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.33e-01 100.0% 55.7%
4971351 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.44e-01 98.6% 60.0%
5073914 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.45e-01 100.0% 62.4%
5046444 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.30e-01 100.0% 56.4%
5049764 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.55e-01 98.6% 68.7%
3594372 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 53.0 3.14e-01 100.0% 99.7%
4945960 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 52.0 4.40e-01 100.0% 62.3%
5044615 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 52.0 4.35e-01 100.0% 57.0%
4972549 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.60 51.0 4.41e-01 100.0% 65.0%
3600598 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 51.0 4.23e-01 98.6% 65.7%
4979423 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 51.0 4.29e-01 100.0% 59.3%
4999281 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.60 52.0 4.25e-01 100.0% 57.9%
3971224 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 50.0 3.64e-01 97.3% 45.8%
5077954 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.33e-01 100.0% 61.5%
4034506 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 52.0 4.13e-01 100.0% 49.0%
5051250 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 50.0 4.29e-01 100.0% 61.5%
4972248 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 4.30e-01 100.0% 63.1%
3299766 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 51.0 3.95e-01 98.6% 64.8%
3782077 223.2.1.8 a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.59 50.0 4.04e-01 100.0% 63.2%
4957253 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 50.0 4.29e-01 100.0% 65.0%
5083496 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 50.0 4.28e-01 100.0% 64.8%
4979823 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 50.0 4.56e-01 100.0% 79.0%
3603559 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.58 49.0 4.40e-01 100.0% 70.9%
4945195 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 50.0 4.35e-01 98.6% 65.2%
5065368 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 49.0 4.43e-01 100.0% 73.1%
3482586 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 4.15e-01 98.6% 87.2%
5016233 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 48.0 4.34e-01 100.0% 67.6%
3971649 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 50.0 3.74e-01 100.0% 40.5%
3783241 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.56 47.0 3.88e-01 98.6% 53.1%
3911145 223.7.1.1 a+b three layers › Profilin-like › FLJ32549 C-terminal domain-like › FLJ32549 C-terminal domain-like › C12orf66_like 0.56 47.0 3.93e-01 100.0% 72.9%
5049782 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 48.0 4.00e-01 100.0% 59.3%
3937833 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 47.0 3.47e-01 100.0% 51.4%
360905 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.55 38.0 3.42e-01 100.0% 49.1%
3239005 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 47.0 3.00e-01 100.0% 21.2%
5053568 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 47.0 3.92e-01 98.6% 57.8%
4135073 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 47.0 3.25e-01 100.0% 81.1%
5052185 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 46.0 3.91e-01 100.0% 94.6%
3921321 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.09e-01 100.0% 73.7%
3168064 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.61e-01 100.0% 49.4%
3672678 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.53 33.0 3.19e-01 100.0% 52.9%
3240591 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 45.0 3.18e-01 100.0% 28.8%
3614986 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 45.0 3.10e-01 100.0% 44.1%