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NPH-1

Euk-Vir

Nile_crocodilepox_virus

NPH-1__YP_784308__Nile_crocodilepox_virus__1285600

Identity

Accession:: YP_784308 ↗
Protein ID:: NPH-1
Kingdom:: euk

Quality

78.9 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Crocodylidpoxvirus› Nile_crocodilepox_virus

TaxID: 1285600

Cluster

View cluster (106 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-237_516-555

PDB

Domain cluster: rep: HQ123590.1__ADW08988.1__CN77-20-1__00001__D9-139_144-252

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00176.30 best	SNF2-rel_dom	88.1	8.00e-25	83.2%	74.0%
PF04851.22	ResIII	33.9	4.00e-08	58.8%	86.6%
PF08469.16	NPHI_C	40.5	4.00e-10	24.8%	29.7%

D2 medium residues 246-369

PDB

Domain cluster: rep: nucleoside_triphosphate_phosphohydrolase-I__YP_009143424__Raccoonpox_virus__10256__D241-297_331-368

CATH (9)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1o9gA02	1.10.287.540	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.75	27.0	4.51e-01	83.9%	95.3%
2nr4A02	1.20.58.290	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121.	0.74	25.0	3.70e-01	83.1%	65.5%
2gomA00	1.10.10.1270	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV	0.71	23.0	3.30e-01	81.5%	59.0%
1yxrA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.63	25.0	3.16e-01	87.1%	58.1%
2ra1A03	1.20.58.770	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	22.0	2.88e-01	82.3%	60.3%
1a36A04	1.10.132.10	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.55	36.0	3.20e-01	82.3%	46.3%
3c1dB01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	23.0	3.16e-01	83.9%	74.2%
1e3pA02	1.10.10.400	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain	0.53	27.0	3.12e-01	78.2%	66.3%
5i1uA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.53	43.0	3.34e-01	89.5%	95.3%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4994292	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.72	27.0	3.07e-01	84.7%	43.6%
3667622	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.55	27.0	3.14e-01	90.3%	63.3%
4059716	141.1.1.8 ↗	alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2	0.55	45.0	3.46e-01	91.1%	93.2%
5010044	632.22.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats	0.52	31.0	3.46e-01	81.5%	76.8%
4993195	632.6.1.15 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › Plasmid maintenance system epsilon/zeta, antidote epsilon subunit › PF26119	0.51	29.0	3.29e-01	79.8%	72.6%
2466675	109.2.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9	0.51	43.0	2.97e-01	94.4%	80.4%
3878696	2004.1.1.149 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SecA_DEAD	0.50	41.0	2.68e-01	89.5%	78.3%
5039785	632.22.1.200 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › PF26119	0.50	29.0	3.29e-01	81.5%	74.5%

D3 medium residues 370-499

PDB

Domain cluster: rep: OQ622096.1__WGH28569.1__13VV501A_gene0073__00071__D542-667

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00271.38 best	Helicase_C	45.6	1.00e-11	83.1%	89.1%

D4 medium residues 567-626

PDB