NPH-1_transcription_termination_factor

Euk-Vir

Penguinpox_virus

NPH-1_transcription_termination_factor__YP_009046052__Penguinpox_virus__648998

Identity

84.8 mean pLDDT

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Avipoxvirus› Penguinpox_virus

TaxID: 648998

View cluster (106 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-240_523-562

PDB

Domain cluster: rep: HQ123590.1__ADW08988.1__CN77-20-1__00001__D9-139_144-252

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00176.30 best	SNF2-rel_dom	118.1	6.00e-34	83.6%	77.4%
PF04851.22	ResIII	48.6	1.30e-12	57.5%	98.2%
PF08469.16	NPHI_C	57.9	1.70e-15	17.5%	30.4%

D2 medium residues 334-406

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2c9kA01	1.20.190.10	Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain	0.52	44.0	3.19e-01	100.0%	92.9%
6cnzF00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.50	40.0	3.20e-01	89.0%	98.1%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3613495	2498.5.1.0 ↗	mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like	0.56	46.0	4.50e-01	90.4%	93.8%
4942945	103.7.1.1 ↗	alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › dsDNA_bind	0.54	40.0	3.75e-01	78.1%	71.6%
4243821	3317.1.1.0 ↗	alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain	0.53	37.0	3.86e-01	80.8%	77.1%
3597127	3636.1.1.0 ↗	a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain	0.51	40.0	3.12e-01	90.4%	43.9%