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NS1

Euk-Vir

Porcine_bocavirus_4-1

NS1__YP_004869645__Porcine_bocavirus_4-1__1084717

Identity

Accession:
YP_004869645 ↗
Protein ID:
NS1
Kingdom:
euk

Quality

82.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Porcine_bocavirus_4-1

TaxID: 1084717

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 325-381
PDB
Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409
D2 high residues 402-594
PDB
Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF01057.24 best Parvo_NS1 256.9 2.40e-76 97.9% 68.3%
PF00519.24 PPV_E1_C 31.2 1.90e-07 89.6% 52.9%
PF19263.6 DUF5906 30.5 6.90e-07 53.9% 90.3%
D3 medium residues 9-26_56-89_202-282
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 39.0 8.60e-10 63.2% 26.6%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kw3A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.77 70.0 5.41e-01 95.5% 98.1%
4ha8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 22.0 3.11e-01 95.5% 69.8%
1c7uA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.55 19.0 2.74e-01 99.2% 65.1%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 26.0 3.36e-01 74.4% 87.3%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1491756 304.55.1.9 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › PV_NSP1 0.57 53.0 4.26e-01 98.5% 100.0%
D4 medium residues 27-55_90-201
PDB
Domain cluster: rep: NS1__YP_009010974__Porcine_bocavirus__1165907__D24-52_142-216
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22419.3 best HBoV_NS1-like_N 63.8 2.30e-17 79.4% 30.9%