←Back to structures

NS1

Euk-Vir

Canine_bocavirus_1

NS1__YP_007518454__Canine_bocavirus_1__1511885

Identity

Accession:: YP_007518454 ↗
Protein ID:: NS1
Kingdom:: euk

Quality

85.7 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Canine_bocavirus_1

TaxID: 1511885

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 312-370

PDB

Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	24.4	1.80e-05	100.0%	21.0%

D2 high residues 390-582

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	257.5	1.60e-76	98.5%	66.4%
PF00519.24	PPV_E1_C	32.3	8.20e-08	87.1%	49.5%
PF19263.6	DUF5906	32.1	2.20e-07	54.4%	90.3%

D3 medium residues 12-40_199-276

PDB

Domain cluster: rep: NS1__YP_009508797__Miniopterus_schreibersii_bat_bocavirus__1911554__D13-31_203-299

D4 medium residues 41-69_140-198

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hxaA02	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.62	47.0	3.13e-01	81.8%	71.9%
2hjmA01	1.20.120.460	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like	0.61	49.0	5.03e-01	88.6%	86.0%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.58	47.0	4.41e-01	85.2%	89.6%
1m62A00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.56	45.0	4.54e-01	84.1%	90.8%
1aepA00	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.56	47.0	3.90e-01	92.0%	99.3%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.55	46.0	4.10e-01	89.8%	80.6%
1orjD00	1.20.120.340	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS	0.55	48.0	4.23e-01	93.2%	80.8%
7p3rA01	1.20.1170.10	Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; ›	0.54	44.0	2.99e-01	89.8%	84.3%
1s35A01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.51	42.0	4.04e-01	88.6%	95.0%
3l8rA00	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.51	40.0	3.85e-01	85.2%	92.2%
4xpwA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.50	42.0	3.73e-01	93.2%	74.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3258502	5082.1.1.1 ↗	alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux	0.64	54.0	4.06e-01	90.9%	85.9%
3580289	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.61	52.0	4.50e-01	88.6%	82.4%
3390261	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.61	50.0	4.97e-01	86.4%	86.7%
3569625	604.12.1.4 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1	0.60	49.0	4.11e-01	86.4%	78.6%
3992946	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	45.0	3.24e-01	79.5%	41.7%
3519581	604.12.1.4 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT1	0.60	49.0	4.16e-01	86.4%	81.5%
3395959	5086.1.1.166 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PEX11	0.57	47.0	4.63e-01	86.4%	94.7%
4015907	601.33.1.14 ↗	alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Erg28	0.57	47.0	4.90e-01	88.6%	96.4%
3486748	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.56	47.0	4.39e-01	88.6%	90.5%
3170204	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.56	45.0	3.91e-01	87.5%	65.2%
3998048	109.4.1.63 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42	0.55	44.0	3.33e-01	87.5%	75.3%
3705915	3615.1.1.0 ↗	alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain	0.53	43.0	3.91e-01	88.6%	77.5%

D5 medium residues 70-139

PDB

Domain cluster: rep: NS1__YP_009553047__Rhinolophus_pusillus_bocaparvovirus_2__2053080__D1-52

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22419.3 best	HBoV_NS1-like_N	46.4	4.50e-12	97.1%	22.7%