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NS1

Euk-Vir

Porcine_bocavirus

NS1__YP_009010974__Porcine_bocavirus__1165907

Identity

Accession:: YP_009010974 ↗
Protein ID:: NS1
Kingdom:: euk

Quality

75.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Quintoviricetes› Piccovirales› Parvoviridae› Bocaparvovirus› Porcine_bocavirus

TaxID: 1165907

Cluster

View cluster (44 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-23_79-141_217-279

PDB

Domain cluster: rep: NS1__YP_004869645__Porcine_bocavirus_4-1__1084717__D9-26_56-89_202-282

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22419.3 best	HBoV_NS1-like_N	43.3	4.20e-11	47.0%	23.8%

D2 medium residues 24-52_142-216

PDB

Domain cluster: representative

CATH (19)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4kw3A00	3.40.1310.20	Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, ›	0.76	69.0	5.10e-01	100.0%	71.1%
2d9dA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.72	38.0	4.13e-01	81.7%	59.6%
4dkcB00	1.20.1250.80	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34	0.69	53.0	4.57e-01	81.7%	88.7%
1yo7A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.67	48.0	4.63e-01	75.0%	85.8%
3mq1A01	1.20.58.970	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	46.0	4.89e-01	76.0%	83.7%
4l8iB00	1.10.132.20	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor	0.64	44.0	4.29e-01	70.2%	75.9%
1t72A01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.63	46.0	4.45e-01	75.0%	93.2%
1blwC00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.62	52.0	4.66e-01	89.4%	92.9%
1sumB01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.62	47.0	4.65e-01	77.9%	95.3%
3k2jA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.60	49.0	4.63e-01	86.5%	97.5%
3uumA00	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	43.0	4.09e-01	76.0%	68.0%
1u89A00	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.57	49.0	4.44e-01	92.3%	92.8%
7zxkC01	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.57	48.0	4.24e-01	91.3%	96.7%
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.56	51.0	4.10e-01	99.0%	90.9%
1f68A00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.56	43.0	4.32e-01	80.8%	100.0%
2jswA00	1.20.1410.10	Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain	0.56	48.0	3.94e-01	93.3%	81.0%
4u2vA02	1.10.437.10	Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like	0.51	29.0	3.27e-01	71.2%	71.2%
5nohA00	1.20.120.1350	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain	0.51	35.0	3.59e-01	79.8%	71.8%
1vctA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.50	40.0	4.02e-01	92.3%	83.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3833109	7015.1.1.0 ↗	alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain	0.70	51.0	4.27e-01	76.0%	64.1%
3467780	633.4.1.1 ↗	alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI	0.64	51.0	4.47e-01	83.7%	78.0%
4250162	3755.4.1.0 ↗	alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain	0.60	42.0	3.86e-01	72.1%	97.0%
3611323	109.4.1.357 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd	0.55	38.0	2.97e-01	80.8%	33.6%
3709762	109.4.1.357 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vac14_Fig4_bd	0.53	39.0	2.70e-01	80.8%	24.3%
3712266	192.6.1.0 ↗	alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain	0.52	38.0	3.57e-01	78.8%	69.6%
4944765	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.52	47.0	3.02e-01	100.0%	54.4%
3701760	611.3.1.0 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.50	39.0	3.55e-01	83.7%	92.9%

D3 medium residues 324-381

PDB

Domain cluster: rep: non-structural_protein_1__YP_009272913__Mink_bocavirus_1__2259808__D352-409

D4 medium residues 431-621

PDB

Domain cluster: rep: MN062720.1__QDP45567.1__SEA_FUZZBUSTER_83__00083__D568-722_747-764

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01057.24 best	Parvo_NS1	217.2	3.10e-64	86.9%	57.9%
PF00519.24	PPV_E1_C	32.0	1.10e-07	76.4%	43.2%
PF19263.6	DUF5906	28.5	2.80e-06	55.0%	90.3%